Xylella fastidiosa Temecula1: PD_0233
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Entry
PD_0233 CDS
T00113
Symbol
rpfB
Name
(GenBank) regulator of pathogenicity factors
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
xft
Xylella fastidiosa Temecula1
Pathway
xft00061
Fatty acid biosynthesis
xft01100
Metabolic pathways
xft01212
Fatty acid metabolism
xft02024
Quorum sensing
xft04146
Peroxisome
Module
xft_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
PD_0233 (rpfB)
00071 Fatty acid degradation
PD_0233 (rpfB)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
PD_0233 (rpfB)
09145 Cellular community - prokaryotes
02024 Quorum sensing
PD_0233 (rpfB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
xft01004
]
PD_0233 (rpfB)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xft04147
]
PD_0233 (rpfB)
Enzymes [BR:
xft01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
PD_0233 (rpfB)
Lipid biosynthesis proteins [BR:
xft01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
PD_0233 (rpfB)
Exosome [BR:
xft04147
]
Exosomal proteins
Exosomal proteins of breast milk
PD_0233 (rpfB)
Exosomal proteins of breast cancer cells
PD_0233 (rpfB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
PUA_4
SNAPC3
Motif
Other DBs
NCBI-ProteinID:
AAO28124
UniProt:
Q87ER5
LinkDB
All DBs
Position
complement(297222..298931)
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AA seq
569 aa
AA seq
DB search
MSQTRPWLQHYPSGISIEIDTNAFRTIADVFNTSVIKYRHCPAYTNFGKTLTYGEVDLLT
KQFASYLLNVLKLKKGDRIALMMLNCLQYPVATFGALCAGLTVVNVNPLYTARELKHQLV
DAGSTVLVVMDNFCTTVQQIIADTPIKQVITTELGDLLDFPKRSLINFAVKHIKKLVPEY
QLPRSIRFREALALGSKHSMPPIHIASDDLAFLQYTGGTTGTPKGAMLTHRNMVANMQQV
SQWLQTNNSLKEGCETVLTALPLYHIFVLTANSLVFMKIGGCNHLISNPRNMRTFVKELQ
RVRFTVITGVNTLFNKLLNTPGFDKLDFSSLKIALGGGMVIQRSVAEQWKQVTRVPLIEA
YGLTEASPAACINPLNLQEHNGSIGMPIPSTDVCIKDDTNTVLPIGEMGELCIKGPQVMK
GYWQRPEETSEVLDADGWLHTGDIVKMDKQGFLYIIDRKKEIILVSGFNVYPKEIEEVIA
MIPGVAEVAAVGVPDEQSGEVVKVVIVKKDPMLTAEEVKAHAATNLTRYKLPRIIEFRAT
LPKTDVGKILRRELRDAAPASNTFTAQPK
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaacacgtccttggctgcaacactatccatcgggaatctcaatagagattgat
actaacgctttccgtactatcgctgatgtcttcaatacatcagtcatcaaatatcgtcat
tgtcccgcctataccaatttcgggaaaacacttacctacggcgaagtcgatctattaaca
aaacaattcgccagctatctgctcaatgtgttgaaactcaaaaagggcgaccgaatcgca
ctgatgatgctcaactgtttgcaatatccagtagcgaccttcggcgcactatgcgccggg
ttaactgttgtcaatgtcaaccccctctacacagcgcgcgaactcaagcaccaactggtt
gacgcagggagcactgtattggtggtcatggacaacttctgtacaactgtgcagcagatc
attgctgacaccccaatcaaacaggtgattacgactgaattaggcgacctgctcgatttc
cccaaaagatcactgatcaattttgccgtcaagcacatcaaaaaattagtgccggaatac
caactgcctcgctcaatccgcttccgtgaagcactcgcgctgggaagcaagcattccatg
cctccaatccacatcgcaagcgacgatttagcttttctacaatacaccggcggcacaacg
gggacacccaaaggcgcaatgctgacccacagaaatatggtcgcgaatatgcagcaggtg
tcgcagtggctccaaacaaacaacagtctcaaagaaggctgtgaaacagtgctcactgct
ctaccgctgtatcacatttttgtgttaaccgcgaacagcttagtctttatgaaaatcggt
ggttgcaaccatctgattagcaatccacgcaacatgcgaacattcgtcaaagagttgcaa
cgcgtccgcttcactgtcatcactggagtcaacacactgttcaataaactccttaacacc
ccgggcttcgacaaacttgatttctcttctctgaagattgccctgggtggcggcatggtg
atccagcgctccgtcgccgaacagtggaagcaagttactcgtgttccgctgattgaagct
tacggacttaccgaggcatcaccagcggcatgcatcaatccgctgaatctgcaagaacat
aacggttcgatcggtatgccgatccctagtactgatgtctgtattaaagatgacaccaac
accgtattacctataggcgaaatgggcgaactgtgtattaaaggtccgcaagtgatgaaa
ggctactggcaacgcccagaagaaacttcagaagtgttagatgcagacggttggctgcat
actggggacattgtcaaaatggacaaacaagggtttctgtacatcatcgaccgtaagaaa
gaaatcattcttgtctctggcttcaacgtctatccgaaggaaatcgaagaagtcattgca
atgatcccaggcgtggctgaagtcgctgcggtcggagtcccggacgagcagtccggcgaa
gtcgttaaggtagtgattgtcaaaaaggatcccatgctgaccgctgaggaagtaaaggcg
catgctgcgaccaacctgaccagatacaagctaccacgcatcattgagttccgtgcgaca
ctccctaaaaccgatgttggcaagattttgcggcgcgaattgcgagacgcagcaccggca
tcaaacacattcacagctcagcccaagtag
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