Xylella fastidiosa Temecula1: PD_0402
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Entry
PD_0402 CDS
T00113
Symbol
recJ
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
xft
Xylella fastidiosa Temecula1
Pathway
xft03410
Base excision repair
xft03430
Mismatch repair
xft03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PD_0402 (recJ)
03430 Mismatch repair
PD_0402 (recJ)
03440 Homologous recombination
PD_0402 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xft03400
]
PD_0402 (recJ)
DNA repair and recombination proteins [BR:
xft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PD_0402 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PD_0402 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PD_0402 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AAO28282
UniProt:
Q87EB5
LinkDB
All DBs
Position
490532..492373
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AA seq
613 aa
AA seq
DB search
MWCAYSAGRLSVPKIIRRLSLPLVVWPDNVPPLLRRVYTARGCADPVTAQPCLAQLLSPA
MLSNMQAATVLLTEVIKANGRILVVGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMV
HGYGLSSALVEELAPLQPALLVTVDHGIACHAGIAAAKARGWKVLVTDHHLPGETLPAAD
VIVNPNLPGDLFPSKTLAGVGVIFYVLLALRARLYPAARAECEGQETRIHSSISQKNRPD
LTSLLDLVAVGTVADLVPLDTNNRALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTAT
DIGFALSPRLNAAGRLEDMALGIELLLTEDWTRARAIAAMLEEINAARRVVQQGMSDDAE
QAVAQAMAQSGGVLPMAVCLFDPDWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRG
SARSIPGLHIRDVLVALDSGYPGMIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVD
KNVLQAELYSDGELAADELDALHARALRLGGPWGQGFPEPLFDGEFEVLQWRVLKERHLK
MEVRYSGRHDALNAIYFNGWQGDPPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIECDV
LGSQAISSGLLDP
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
gtgtggtgtgcgtactcagctggccgattgagcgtgcccaagattattcgccgtctctct
ttgccgctggttgtttggcctgacaatgtgccgccattgctacgacgtgtgtacacggca
cgtggttgtgctgatccggtgacggcgcaaccctgtctcgctcagttgttgtcacccgcc
atgctgagcaacatgcaggcagccactgtattgctgactgaggtcatcaaggccaatggg
cgtattctggttgtcggtgattttgactgcgatggtgcaactgcctgtgcggttgcggtg
cgtggtttgcgtttgcttggcgcgcgtaacgtgatgcatgcggtccccaatcgtatggtg
catggttacggtttgtcgtcggcattggttgaggagttggcaccgttgcagccagcgttg
cttgttacggtggatcacggcattgcttgccatgctggcattgctgctgctaaggcccgc
ggttggaaggtgttggtgactgatcaccatttgccgggtgaaaccttgccagcagccgat
gtcattgttaatccgaatctgcctggcgatttgtttccgagtaaaacgctggcgggtgtc
ggggtgatcttttatgtactgcttgcgctgcgtgcgcgtctttatcctgctgctcgtgct
gagtgcgaaggtcaagaaacgcgtattcacagttctatttctcagaaaaaccgtcctgat
ttgacgtccttactggatttagttgcggtcgggacggttgccgacttggtgcctttagat
acgaataatcgtgctttggttgctgccggcttgcgccggttgcgtcgtggtcaagggtgt
ctcggactacgcgcgttgatcgaggtcagtggccgtgatgagtcgcaattgaccgctact
gatattggttttgcattgagtccgcgtctgaacgctgcgggacggttggaggatatggcg
ttgggcattgaattgttgctcactgaggattggactcgcgcgcgtgctatcgcagccatg
cttgaggagattaatgccgcacgccgtgtggtacagcagggtatgagtgacgatgctgag
caggcagtagcgcaagcgatggcgcagtcaggcggtgtgttgccaatggcggtgtgcctg
ttcgatccggactggcatccaggagtgattggtttggtcgcgtccaagatgaaggacaaa
atgcaccgtccggtggtggctttagcaccggctgagccgggaggtacagtgttgcgaggg
tcggcacggtcgatcccaggactgcatatccgcgatgtattggtggcgctcgacagtggt
tatcccgggatgattcagaaatttggaggtcatgcgatggcggccggcttgacactggat
gcggaggtgttgccggtgttcgaacgtgtatttcgtgcccaagttgagatgatggttgat
aagaatgtgttgcaggctgagttgtatagcgatggtgaattggcggccgatgagctggac
gcattacatgcgcgggcattgcggctgggtgggccatggggacaggggtttccagagcca
ttgtttgatggagagtttgaagtgctgcaatggcgtgtcctcaaggagcgtcatttgaaa
atggaggtgcgttattcaggacggcatgacgctctgaacgctatttatttcaacggctgg
cagggtgatcctccagcacggcgattgcgtttggcatatcggttggtttgcgacgattac
cgcggtggtgatgcgattcagttgatcgtggaatatgcggaagtgattgaatgtgatgta
ttgggttcccaagcaatttccagtggcctacttgatccttag
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