Xylella fastidiosa Temecula1: PD_0619
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Entry
PD_0619 CDS
T00113
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xft
Xylella fastidiosa Temecula1
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xft03019
]
PD_0619 (hrpA)
Enzymes [BR:
xft01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PD_0619 (hrpA)
Messenger RNA biogenesis [BR:
xft03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PD_0619 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
FtsK_SpoIIIE
AAA_30
AAA_25
NACHT
SRP54
AAA_23
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AAO28491
UniProt:
Q87DR2
LinkDB
All DBs
Position
759506..763942
Genome browser
AA seq
1478 aa
AA seq
DB search
MYCHAIFCNLRLMSVIEQNILGQLRQHRRAIDDAMTRDRGRLLGLWSRWQSQPHDHEARA
NFQRVLSASRAQRQVRENNQPVVTVDTRLPIAQEAERIVALIRAHPVVIIAGETGSGKTT
QLPKLCLSAGRGIAGTIGCTQPRRIAARAVATRVAEELQTPLGMVVGFQVRFTEKVSDAS
RIKFMTDGILLAEVASDRWLSAYDTIIIDEAHERSLNIDFLLGYLKQLLKKRADLKVIVT
SATIDTARFSKHFDDAPVIHVAGRTYPVEVRYRPLDAMWASDDRLGEAYGGTESLAVNRW
AGGSEGDGALSKPIVALPQEDQRTVNDAIVAVIDEITREDPHGDVLVFLPGEREIRELYR
VLERRKYRETELLPLYARLSARDQDRVFNPGSGRRLVLTTNVAETSLTVPRIRYVIDPGY
ARVKRYSARQKLDRLYIEPISQASANQRAGRCGRIADGVCYRLYSEEDFLARSAFTDPEI
RRSSLAGVILRMLQLGLGRIGGSAASLSEPVSGPEQQRTSWIIESFSFLEPPDERAVADG
WQQLVELGAVDSQHVLTAIGREMARLPVDVKSARMLVAARQHGCVHEMTVIAAFLGVQDP
RERPPEAREAADNAHAKFADARSEFVGILRLWEAYRQIRGHMTQSKLRQWCQRHFLGFLH
MREWCELQLQLSLLCAGEQAEQPRKGRAAAAFPKEGCLPSQRSKPGAEVGKGNELPSSAT
VLQALLAGQGTSTQSEHRGNTPSRGQLHRAARLARERSAVLKVTHNTQSVKAVAGQSVSH
AGMQAQFAVPPNDAPHIGERERAAAYQALHRALLTGLPIQIGHRTEKGDFQAPRQRRFML
FPGSMLAKKPPPWVLAANLLDTQKVWGLTNAAIEPDWVIAELPHLLMRKHFNPHWSRTQG
RVLVSEQISLFGLLLAPKKPMHYGRIDPVAAHDLFVRQGLVTGEINTRAGFVADNLKVLE
QAHEEEAKLRRAGIVADEDWQARWYFDRVPSDIHTADALDSWWKGLPVEKRHGLYWSLID
LLPGEGGEEDRYPKYFALGDVRLPLHYSFDPGAVDDGVTLEVPLHLLNALDPVRLSWLVP
GFVADKAAALIRSLPKALRRSYVPAPDFARAFAQAFQQPSADEMRGELARFLSRITGVRV
AAIDFDEQTLEPYLHLRVRLYDESGQVLAESRDFDALRARFGSYSGEAFVARAGRTLIME
ELREFPAVSIPLQLTGEAGVPMYPALVDDGEMAALRIFADPTEAAQVHPHGVRRLLEIAL
ANKIKQARKQLPVSSKSGLLYAAIESKECLRDDLVKAALNAVLAHGLESIRDPVAFAQCR
DVAAQQLFSEAMARLSLAEEILAAVAELKPLLEAPLMGWARGNLDDMERQLAQLVYPGFL
RQTPADVLTQYPRYLKAMMMRSERAKRDPSRDQARMLELKPFLDALEVAMAQGVSDTPGW
ETLRWDVEELRVSLFAQELGVRSGISVKKLAQRLAALR
NT seq
4437 nt
NT seq
+upstream
nt +downstream
nt
atgtactgtcatgcgatcttctgcaatttacgattgatgagcgttatcgaacagaatatt
ttgggccaattgcgtcagcatcgtcgtgcgattgacgatgcgatgacccgtgatcgtggc
aggttgctgggcctatggtcgcgttggcagagtcagccacatgatcatgaggcgcgtgct
aacttccagcgggtgttatctgcatcacgggcacagcgtcaggtccgtgagaataatcag
ccagtggtcacggtggatacccgtttacctattgcacaggaagcagagcgcattgtcgcg
ctgatccgggcgcatcctgtggtaatcattgctggtgaaactggttcgggaaagaccacg
caattaccgaaattgtgtctgtccgctggacgtggcattgccggtacgatcgggtgtacg
caaccacggcgtattgcagcgcgtgcggtggcaacgcgggtggctgaggagcttcaaacg
cccttgggaatggtggtgggctttcaggtgcgttttaccgagaaggtcagtgatgcctca
aggatcaagttcatgaccgacggtattttgctggcggaggttgccagtgaccgttggttg
tcagcctatgacacgatcattattgatgaagcccatgagcgcagtctcaatattgatttt
ttactcggttatctcaagcagttactgaaaaagcgtgctgatttgaaggtgatcgtgacc
tcggcgacgatcgacacggcacgcttttccaagcattttgatgatgcgccggtgattcat
gtggctggacgcacctacccggtggaggtgcgttaccgtccgttggatgcgatgtgggct
tctgatgatcgccttggggaagcctacggcggaactgagtccctggctgtgaatcgttgg
gcgggaggatctgaaggtgacggcgcgctgtcaaagcccatcgtggcgctgcctcaagag
gatcagcgtactgtcaatgatgcgattgtggcagtgatcgacgagatcacccgtgaggac
ccgcacggtgatgtattggtgtttctgcccggtgagcgtgagattcgtgagctgtatcgg
gtactggagcggcgtaagtatcgtgagacggaactgctgccgttatacgcgcggttgtcg
gctcgcgatcaagatcgggtgttcaaccccggctctgggcgtcgcctggtgctgacgacc
aacgttgctgaaacatcattgacggtgccacggatccgctatgtgatcgatccgggctat
gcgcgcgtgaagcgctacagtgcgcgccagaagttggacaggttatacattgagccgatc
agtcaggccagtgccaaccagcgtgccggtcgttgcggccgcattgccgatggtgtttgt
taccggctctatagtgaggaagactttcttgcacggtcggcattcaccgatcctgaaatt
cggcgctcctccctggccggggtgattttgcgcatgttgcagttgggcctgggacggatt
ggtgggagtgctgcttccttgagcgagcctgtttcagggccggagcagcagcgcacctcc
tggatcattgaaagtttctcgtttctggagccgccggatgaacgtgcggttgccgatggc
tggcaacaattggtcgaattgggggcggtggatagtcagcatgtattgactgcgatcggc
cgcgagatggcacggttgccggtggacgtgaagtcggcgcgcatgctggttgctgcgcgc
cagcacggctgtgtgcatgaaatgacggtgatcgccgcttttctgggggtccaggatcca
cgcgagcgtcctccggaggcgcgtgaagcggccgacaatgcacatgcgaagtttgccgat
gcacgttcggagttcgttggtatcttgcgtttatgggaggcttaccgccagattcgtggg
catatgactcagtccaagttacgccagtggtgccagcgtcattttctgggctttcttcac
atgcgcgagtggtgcgagttgcagctgcaattgtcgctgttgtgtgcgggggagcaggcg
gagcagccacgcaaggggcgagcggcggcggcctttccgaaggagggatgcttaccgtct
cagcgatcaaagccaggggccgaggtagggaagggcaacgagttaccttcaagtgcgacc
gtgttgcaggcactgttagcggggcaggggacctctactcagagtgaacatcgtggtaat
acaccgagtcgtggtcagctgcatcgtgcggcgcgcttggcgcgtgagcgtagcgcggtt
ctcaaggttactcacaacacccagagtgtgaaggcggttgcagggcagagtgtttctcat
gccggtatgcaggcgcagtttgcggtgccacctaatgatgcaccgcatatcggtgagcgt
gagcgtgcggctgcctatcaggcgttgcatcgtgcgttgctgactgggttgccgatccag
attggccatcgtaccgagaagggagattttcaggcgccgcgccagcgccgttttatgttg
tttcctggttcgatgttggcgaagaagccgccaccgtgggtgctcgcagcgaacttgctg
gatacacagaaggtgtggggcttgacgaatgctgcgattgagcctgattgggtgattgct
gaattgccgcatttgttgatgcgcaagcatttcaatccgcattggtcccgtacccagggc
cgagtgttggtgtctgagcagattagtttgtttgggttgctgttggcgccgaagaagccg
atgcactatggccgcattgatccggtggcagcgcatgatctttttgtacgccaagggttg
gtgacgggggagatcaacacgcgtgccggttttgttgctgacaatctcaaggtgttggag
caggcgcacgaggaggaggctaagttgcgtcgtgccggtattgtggccgatgaggattgg
caggcgcgttggtattttgaccgggtgccgagtgacatccatacagccgatgcactggat
tcctggtggaaggggctgccagtggagaagcggcacggtctgtattggtcattgatcgac
ttgttgcctggcgaagggggggaggaggatcgttatccgaagtattttgcactcggggat
gtgaggttgccgctgcactattcgtttgatccaggtgcagtggatgacggtgtcactttg
gaggtgcctttgcatctgcttaatgcgttggatccggtacggttgtcgtggctggtgcct
ggttttgttgccgataaagcggcggcgctgatccgttcgctgcccaaggcgctacgccgc
agttatgtgccggctccagattttgcccgtgcgtttgctcaagcgttccagcagccttcg
gccgatgagatgcgtggtgagttggcacgctttttgtcgcgtattaccggggtacgggtg
gctgcgattgattttgatgaacagacattggaaccttatctgcatctgcgtgtgcgtttg
tatgatgagtctggtcaggttttggcggagtcgcgcgattttgatgcgttgcgtgcccgt
tttggtagctactcgggcgaggcgttcgtagcccgtgccgggcgcacgctcatcatggag
gagctacgcgagtttcctgctgtgtcgattccgcttcagcttaccggtgaggctggggtt
ccgatgtaccctgcgttggttgacgatggtgagatggcggcgttacggatttttgctgat
cccactgaggccgcacaggtgcatccccatggcgtacggcggctcttggagatcgccttg
gccaacaagatcaagcaggcgcgcaagcagttgccggtgtcttccaagagtgggctgtta
tatgcggccattgagtcaaaagaatgtttgcgtgatgaccttgtcaaggcggcattgaat
gcggtgttggctcatggcttggagtcgatccgtgatcctgttgcgtttgcgcagtgccgt
gatgtggcggcgcagcagcttttttctgaggcgatggcgcgactcagtttggccgaggag
attttggctgccgtggctgagctgaagccgttgctggaagcaccattgatggggtgggcg
cgtggcaatctggatgacatggaacggcagttggcgcagttggtgtatccaggttttttg
cgtcaaacacccgccgatgtgttgacgcagtatccgcgctatctgaaagcgatgatgatg
cgcagcgagcgcgctaagcgcgacccgtcgcgtgatcaggcgcgtatgctggaactcaag
ccatttttggatgctctggaagtggcaatggcgcagggtgtttccgacacaccggggtgg
gagacattgcgttgggatgtggaggagttgcgggtttcactgtttgcccaggaattgggg
gtgcgctcggggatttctgtcaagaaattggcgcaacgtttggctgcgttgcgttga
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