Xylella fastidiosa Temecula1: PD_0690
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Entry
PD_0690 CDS
T00113
Symbol
csdB
Name
(GenBank) selenocysteine lyase
KO
K11717
cysteine desulfurase / selenocysteine lyase [EC:
2.8.1.7
4.4.1.16
]
Organism
xft
Xylella fastidiosa Temecula1
Pathway
xft00450
Selenocompound metabolism
xft01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
PD_0690 (csdB)
Enzymes [BR:
xft01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.7 cysteine desulfurase
PD_0690 (csdB)
4. Lyases
4.4 Carbon-sulfur lyases
4.4.1 Carbon-sulfur lyases (only sub-subclass identified to date)
4.4.1.16 selenocysteine lyase
PD_0690 (csdB)
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Gene cluster
GFIT
Motif
Pfam:
Aminotran_5
Cys_Met_Meta_PP
Taq-exonuc
Motif
Other DBs
NCBI-ProteinID:
AAO28561
UniProt:
Q87DJ2
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All DBs
Position
complement(845468..846718)
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AA seq
416 aa
AA seq
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MDRINTSAAPPTSPDWERLRADFPLLQRHVHGKPLIYFDNANTAQKPQAVITATDTFYRR
HNANISRAVHTLGTEATEAYEATRAALATLLNVPMHELVLCSGTTFAINLIAYSWALPRL
RTGDVILVSRMEHHANIVPWQLIAERTGARIQVADILPNGTLDLDALHTLMTPQVKLLAI
THVSNVLGTVNPIHDICRQARQRGITTVVDGSQAAPHRHINIPAIGCDFYAITGHKLYGP
TGTGALWARREHLHIMPPFLGGGEMIKEVSFDGTLFNTPPHKFEAGTPNIAGFIGLSAAV
DYVRRIGIDQIETRETELLAHLTEELQKIDGMRLFGTAPNKAAVVSFMIEGTHAHDLATL
LDLEGVAVRSGQHCAHPLLQYYGVTATCRASLAFYNTHEEIERFITALLKVRKLLG
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtataaacacctccgcagccccccccacatcccccgattgggaacgcctgcgt
gccgacttccccctactgcaacgccacgtacacggaaaaccgctgatctatttcgacaac
gcaaataccgcacaaaaaccccaggcagtgatcactgccaccgacaccttctaccgccgc
cacaacgccaacatcagccgtgccgtacacacactaggcaccgaagccacagaagcctac
gaagccacacgagcagcactggcaaccctacttaacgtccccatgcacgaactggtgcta
tgcagcggcacgaccttcgccatcaacctcattgcctactcatgggcactgccacgactg
cgtaccggcgacgtgatcctagtctcacggatggaacaccacgccaacatcgtcccctgg
caattgatcgctgaacgtaccggcgcacgtatccaagtcgccgacatcctgcctaacggc
accttggatctagatgccctgcataccctgatgacaccccaagtcaaactgctggccatc
acgcatgtgtccaacgtcctgggcaccgttaacccgatacacgacatctgccgccaagca
cggcaacgcggcattacgaccgtcgtcgacggctcccaagcggcaccacatcgccacatt
aatattccggccatcggctgcgacttctatgccatcaccggacacaaactctacggcccc
acaggaaccggagcattatgggcacgccgcgaacacctccacatcatgccgccatttcta
ggtggcggagaaatgattaaagaagtgagttttgacggtaccctcttcaacaccccacca
cataaatttgaagcaggcacccccaacattgccggcttcatcggcctcagcgccgccgta
gattacgtgcgtcgtatcggaatcgaccagatcgaaacacgcgaaacagaactactggcg
catctcaccgaagaactacagaaaatcgacggcatgcgactcttcggcaccgcacccaac
aaagccgccgtggtttccttcatgatcgaaggcacacacgcccacgacctggccacactg
ctcgacctggaaggcgttgccgtacgctctggtcaacactgtgcacaccccctcctgcaa
tactacggagtgaccgccacctgccgcgcctcactggcgttctacaacactcacgaagag
atagaacgcttcatcacggccctgctcaaagtacgcaaactactaggctga
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