Xylella fastidiosa Temecula1: PD_1232
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Entry
PD_1232 CDS
T00113
Symbol
holA
Name
(GenBank) DNA polymerase III delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
xft
Xylella fastidiosa Temecula1
Pathway
xft03030
DNA replication
xft03430
Mismatch repair
xft03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PD_1232 (holA)
03430 Mismatch repair
PD_1232 (holA)
03440 Homologous recombination
PD_1232 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xft03032
]
PD_1232 (holA)
03400 DNA repair and recombination proteins [BR:
xft03400
]
PD_1232 (holA)
Enzymes [BR:
xft01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PD_1232 (holA)
DNA replication proteins [BR:
xft03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PD_1232 (holA)
DNA repair and recombination proteins [BR:
xft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PD_1232 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta
HP_1247_M
DNA_pol3_delt_C
DNA_pol3_delta_C
WRW
Motif
Other DBs
NCBI-ProteinID:
AAO29082
UniProt:
Q87C63
LinkDB
All DBs
Position
1435180..1436211
Genome browser
AA seq
343 aa
AA seq
DB search
MELRPEQLANLPANQPLEPAYLIAGPETLRLVEAADAIRTRARADGITEREIFDVESRDF
DWQQLASSFNAPSLFSSRRLIEIRLPGGKPGKEGSEVITRFCATPSSDVILLITCNEWSK
AHHGKWTDAIARIGKIAIAWSIKPHELPDWITRRLHSKGLRANTDVIHRLSTRLEGNLLA
AAQEIDKLALLNQGPLLDLETMESFVADTARYDVFRLTEAMLSGQPTATIRMLGKLRAEG
EAVAALLPILIKELIRTTTLSWVKHDNGNLAAEMKAQGIWETRQAPFKRALQRHTSPYKW
EHFVAEVGRIDRITKGRNDGNAWLSLERLMVAVAEADATRLLA
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atggaacttcgcccagagcaactcgccaacctgcctgccaatcaacccttagagcctgcc
tacctcatcgccggccccgaaaccctacgcttagtagaagctgccgatgcgatacgtacg
cgtgctcgtgccgacggcatcaccgaacgcgaaatattcgacgtcgaaagccgtgacttc
gactggcaacaacttgcctccagcttcaacgcccccagcctcttcagctcacgtcgctta
atcgaaatacgcctcccgggaggtaaacctggtaaagaaggcagtgaagtcatcacaagg
ttctgcgccaccccctcatcagatgttatcttgctgatcacatgcaacgaatggagcaaa
gcacaccatggcaagtggaccgatgccatcgctcgcatcggtaaaatcgcaatcgcctgg
agcatcaagcctcacgaactacccgactggattacacggcgcctacatagcaaaggctta
cgtgccaacacggatgtaatacaccgattaagcacacgcctagaaggcaacctactggcc
gccgcccaagaaattgacaaattggcgttattgaatcaaggccctctcctcgacctggag
accatggaatcattcgttgccgacacagcgcgttacgacgtattccgacttaccgaagcg
atgctctccggccaacccaccgcaacgatacgcatgctcggcaaactgcgggccgaaggt
gaagcagtggcagcactgctgcccattctgatcaaagaactcatccgtaccacgaccctg
tcatgggtcaaacatgacaacggcaatctagctgccgaaatgaaagcccagggaatctgg
gaaacacgtcaagcacccttcaagcgcgcattacaacgtcatacctcaccgtacaaatgg
gaacacttcgttgccgaagtcgggcgcatagaccgcatcaccaaaggacgcaacgacggc
aatgcctggctgtcactcgaacgtctcatggtggcagtagcagaagcagatgcaacacgt
ctgctagcataa
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