Xylella fastidiosa Temecula1: PD_1385
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Entry
PD_1385 CDS
T00113
Symbol
trmA
Name
(GenBank) RNA methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
xft
Xylella fastidiosa Temecula1
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xft03009
]
PD_1385 (trmA)
Enzymes [BR:
xft01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PD_1385 (trmA)
Ribosome biogenesis [BR:
xft03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PD_1385 (trmA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
PCMT
Methyltransf_11
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltr_RsmB-F
Methyltransf_12
Methyltransf_15
RrnaAD
Ubie_methyltran
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
AAO29232
UniProt:
Q87BR3
LinkDB
All DBs
Position
complement(1607330..1608661)
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AA seq
443 aa
AA seq
DB search
MARQNRFDRTSFQTQIIDLSHDGRGVARPHGEGGKVTFVTGALPGEVVIVEPVARNRHFD
EARVVEVLQASPQRVIPRCSHFGVCSGCVLQHLAEDAQVVSKQRVLLESLERIGCVSPER
VLPALAAESWGYRRKGRFSVRWVEKKGRTLVGFREHDPRFVADVSVCHTVVPQVGEKIAL
LATLLDSLDGRCDVPQIEFIAGDAVVALTVRHLQPLSEADRLALIEFGKEHGIAIFLQSG
GVESVRLLWPDEVLLAFRLKPWDVEFVFRPLDFIQINGGLNEKMIAHALDLLGAGFGERV
LDLFCGLGNFTLPLARTVGEVVGVEGDIGLVERARENARRNGLGNAEFFVADLTRDQRDA
PWMRQGFDKLLLDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLR
AVGAMDMFPHTAHVESIAVFDRC
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
gtggctcgccaaaatcgtttcgatcgtacgtcatttcaaacgcagattattgatctcagt
catgatgggcgtggggttgcacgacctcatggcgagggaggtaaggtgactttcgtcact
ggcgcgcttccaggtgaggtggtgattgttgagccagttgcgcgtaatcgtcattttgat
gaggcacgtgtcgttgaggtgttgcaggcatcgccgcaacgggtgataccgcgttgctcg
cattttggtgtctgttctggttgtgtattgcagcatttggctgaagatgcgcaggttgtg
tcgaagcaacgggtgttgttggaaagtttggaacgtattggttgtgtcagtccggagcgt
gtgttgccggcgttggccgcggagagctgggggtatcggcgtaaggggcgtttttctgta
cgttgggttgagaaaaaggggaggacgctggttggtttccgtgagcatgatccgcgtttt
gttgccgatgtgtcggtctgtcatacagtggttccgcaggtcggtgaaaaaattgcgctt
ttggcaacgttgcttgacagtttggacggtaggtgtgacgtaccgcagattgagtttatt
gccggtgatgctgttgtggcattaacggtgcgtcatttgcagccgttgagtgaggcggat
cgtttggcgctgattgagtttggcaaggagcatggtattgcaatttttttgcagtcgggt
ggggtggagagtgtgcgtttgttgtggcctgatgaggtgttgttggcatttcgcttgaag
ccttgggatgtggagtttgtgttccgtccgctggatttcattcagatcaatggtgggctg
aatgagaagatgattgcgcatgctttggatctgctcggtgctggatttggggagcgtgtg
ctcgatctgttttgtggtttgggtaacttcacgttgccgttggcgcgtactgtgggtgag
gtggttggagtggagggtgatattgggctggtggagcgggccagggagaatgcacggcgt
aatggtttggggaatgctgaattttttgttgctgatttgacccgtgatcaacgcgatgcg
ccgtggatgcgtcagggctttgataagttgctgttggatccgccgcgttccggagcgatt
gaggtactcaagcagttgccgttaaagatgttcgaacgcatcgtttatgtcagttgtcat
cctggatctctggcgcgtgatgctgatttccttgtcaatgaacagggctttgtgttgcgt
gcggttggggcgatggacatgtttccgcatactgcgcatgtggagagtattgctgtattt
gatcgttgctga
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