Xylella fastidiosa Temecula1: PD_1498
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Entry
PD_1498 CDS
T00113
Symbol
holB
Name
(GenBank) DNA polymerase III delta subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
xft
Xylella fastidiosa Temecula1
Pathway
xft03030
DNA replication
xft03430
Mismatch repair
xft03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PD_1498 (holB)
03430 Mismatch repair
PD_1498 (holB)
03440 Homologous recombination
PD_1498 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xft03032
]
PD_1498 (holB)
03400 DNA repair and recombination proteins [BR:
xft03400
]
PD_1498 (holB)
Enzymes [BR:
xft01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PD_1498 (holB)
DNA replication proteins [BR:
xft03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PD_1498 (holB)
DNA repair and recombination proteins [BR:
xft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PD_1498 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
GP46
AAA
Motif
Other DBs
NCBI-ProteinID:
AAO29341
UniProt:
Q87BF7
LinkDB
All DBs
Position
complement(1738698..1739669)
Genome browser
AA seq
323 aa
AA seq
DB search
MNGVDCLGNSWMMSALTPWQQRAYDQMVAALDAGHLGHGLLLCGPEGLGQRAVSLAFADT
VLGKGLTEVARQRCRQLITAGTHPDLHLVSFIPTKTADKLRTEIVIEQIRDLSEKLVLTP
QYGQAQVVIIDPADAINPAACNALLKTLEEPASGCYLWLISPQPARLPVTIRSRCQRLEF
KLPPLHEALAWLVAQGITEKVAVEALDAARGHPGLAMQWLCDEGMALRRRVAVELEQLAS
GQMSAVKLAQQWTADGKAEQRLYHAADLAFMQATSVLTDPSRLHKLATWFDAVNRTRDLL
RTTVRADLAVIELLLAWRTRWEC
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgaatggtgttgattgcctaggaaattcatggatgatgtcggcacttaccccttggcag
cagcgtgcttacgatcagatggtggcggcgttggatgctggccaccttgggcatggctta
ttactctgcggtcctgaaggattagggcaacgtgcggtttcgcttgcttttgctgatact
gtccttggcaagggactgacagaagttgcacgccagcgttgtcgtcaattgatcactgcc
ggtacccatcctgatctccatttggtctcgtttattccgacgaagacggcagacaagctg
cgtaccgaaatcgtgatcgaacagatacgtgacctctctgagaagctggtgttgactccg
cagtatggtcaagctcaagtggtgatcattgatcctgctgatgcgatcaaccccgctgcg
tgtaatgcattgctgaagacgcttgaggagccagcctcggggtgctatctctggttgatc
agcccacagccggcacgactgccagtgaccattcgcagtcgttgccagcgtttagaattt
aaattgccgccgctgcacgaagcgctggcctggttagtggcacagggcatcactgagaag
gttgccgttgaagcacttgatgcggcacgtggccatcctggtttggctatgcagtggttg
tgcgatgaggggatggcattgcgccgcagggttgctgttgagttggaacagcttgccagc
ggccaaatgagtgcagttaagttagcgcagcagtggactgctgacggcaaggccgaacag
cgcctgtatcatgcggctgatctggccttcatgcaggctacgtctgtcttgaccgatccg
tcacgtttgcacaagctggcgacttggttcgacgcagtcaaccgtacccgtgatttgctc
cgtaccacagtacgtgccgatctggcagtcattgaattgttgttagcttggcgcacccgc
tgggaatgctga
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