Xylella fastidiosa Temecula1: PD_1767
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Entry
PD_1767 CDS
T00113
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xft
Xylella fastidiosa Temecula1
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xft03032
]
PD_1767 (topA)
03400 DNA repair and recombination proteins [BR:
xft03400
]
PD_1767 (topA)
Enzymes [BR:
xft01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PD_1767 (topA)
DNA replication proteins [BR:
xft03032
]
Prokaryotic type
DNA Topoisomerases
PD_1767 (topA)
DNA repair and recombination proteins [BR:
xft03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PD_1767 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AAO29601
UniProt:
Q87AQ6
LinkDB
All DBs
Position
2058300..2060747
Genome browser
AA seq
815 aa
AA seq
DB search
MPKHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPENGFAMRYDLIDKN
EKHVEAITKAAKTADSIYLATDPDREGEAISWHISEILKERGLLKDKPMQRIVFTEITPR
AIKEAIQKPRMIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV
EREEEIEAFITREYWSIHAECTHPAQHFSAKLIKLDGKKFEQFTITDSDTAAAAQRRIQQ
AAQGRLHITDVTNKERKRRPAPPFITSTLQQEASRKLGFTTRKTMQIAQKLYEGIALGEE
GSVGLITYMRTDSVNLSLDALSEIRDIIARDYGTNALPDKPNVYTTKSKNAQEAHEAVRP
TSALRTPTQVAPYLSNEEHRLYELVWKRTVASQMIPAILNTTSVDLAAGNEHVFRATGTT
VVVQGFLAVYEEGKDNKNAEDDDEGRKLPVMKTGENVPLERILTEQHFTQPPPRYTEAAL
VKALEEYGIGRPSTYASIIQTLLFRKYVDMEGRSFRPTDIGRAVSKFLSSHFTQYVDYDF
TAHLEDELDAISRGEEEWIPLMKKFWVPFKELVEDKKDSLDKTDAGSVRLLGIDPTSGKE
VSARIGRFGPMVQIGTVDDEEKPRFASLRPNQSIYSISLEEAIELFKMPRVLGEDQSQQV
SVGIGRFGPFAKRGSTYVSLKSEDDPYTIDLARATLLINEKEEIARNRIIKDFENSQIQV
LNGRFGPYISDGKLNGKIPKDREPASLTLEEAQQLLINTGKPARKNFSTKKTATKNETRK
QTTKKRTTDAKATKKVSDKPVKKQIKKRIAPNITQ
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaacaccttcttatcgtcgaatcgcccgccaaggccaagacgatcaataaatat
ctcggcaaagatttcacagtcttagcctcttacgggcatgtacgcgatttggtaccgaag
gaaggcgcagtcgatccagaaaacggctttgcgatgcgctacgacctcatcgacaagaac
gaaaagcacgtcgaagcaatcacaaaagcggccaaaacagccgacagcatctatctagca
accgaccctgatcgcgaaggcgaagcgatcagctggcacatctccgagatccttaaagaa
cgtggattattgaaggacaaaccgatgcaacgcatcgtgttcaccgagatcacaccacgc
gcaattaaagaagcaattcaaaagccgcggatgattgccagcgacctggtagacgcccaa
caagcacgccgtgcgctggattacttggttggcttcaacctctcaccagtgctgtggcgc
aaagtacaacgcggtttatcggcagggcgtgtgcaatcgccagcactgcgcatgattgtc
gagcgtgaagaggaaattgaggcattcatcacgcgtgaatactggagcatccatgccgag
tgtacccatcccgcccaacacttcagcgccaaactcatcaaactggatgggaaaaaattc
gagcaattcactattaccgatagcgacactgccgcagccgcacaacgcaggatccagcag
gccgcacagggacgcctgcacatcactgacgttaccaacaaagaacggaaacgacgccct
gcaccgcccttcatcacatccacattacagcaagaagcctcacgcaaactgggtttcact
acacgtaaaacgatgcagattgcgcaaaaactttacgaggggatcgcactgggtgaggaa
ggcagcgtcggcctgattacgtatatgcgtaccgactcagtcaacctgtcgctggatgct
ctatcggagatccgcgacatcatcgcacgcgactacggtaccaatgcacttccagacaaa
cctaacgtctacaccaccaaatccaaaaacgcacaagaagcacacgaagcagtacgcccg
acttcagcactacgcaccccgacacaggtcgcaccgtatctttccaacgaagaacaccgg
ctatacgaactggtgtggaaacgtacagtagcctcccaaatgatcccagccatactcaat
accaccagtgtcgatctagccgccggcaacgaacacgtattccgtgccaccggaaccacc
gtcgtagtacaaggtttcctagctgtgtacgaagaaggcaaggacaacaagaacgccgaa
gacgatgacgaaggccgcaaactccccgtaatgaaaacaggggaaaatgttccgctagaa
cgtatcctgaccgaacaacactttacacagccaccaccacgctacaccgaagcagcgttg
gtcaaagctctggaagaatacggcatcggtcgcccatcgacttacgcctccatcatccaa
accctactatttcgcaaatacgtagatatggaaggtcgcagcttccgcccaacggacatt
ggccgcgccgtatccaaatttctctccagccacttcacccagtacgtggactacgacttc
accgcacacctggaagatgaattggatgcgatctcacgtggggaggaagaatggattcca
ctgatgaaaaagttttgggtccccttcaaagaattggttgaagataagaaagattcccta
gataaaaccgacgctggcagcgtgcgcctgctcggcattgaccccaccagcggcaaagaa
gtcagcgcacgcattggccgcttcggaccgatggtgcaaatcggcaccgttgatgatgaa
gaaaaaccaagatttgcctcattacgccccaaccaaagcatctactcaatcagcctcgaa
gaagccatcgaactgttcaaaatgccacgcgtgcttggagaagaccaaagccaacaggtc
agcgtcggcatcggccgctttggaccgtttgccaaacgtggcagcacttatgtttcactg
aaaagcgaagacgatccctacacgattgacttggcgcgcgcgacccttctcatcaacgag
aaagaagaaatcgcacgtaatcgaatcatcaaagacttcgaaaacagccagatccaagta
ctgaacggacgcttcggtccctacatcagcgatggcaaacttaacgggaagatccccaag
gatcgcgaaccagcctcgctgactctcgaagaagcacagcaattactgataaacactggg
aaaccggcacgcaaaaacttcagtacgaaaaaaactgcaaccaagaacgagacgcgcaaa
caaaccacaaaaaaacgcactacggacgcaaaggcaaccaaaaaagtgtcagataagccc
gtaaagaaacaaatcaaaaaacgcatcgcccccaacattacccaataa
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