Xylella fastidiosa Temecula1: PD_2000
Help
Entry
PD_2000 CDS
T00113
Symbol
rpoC
Name
(GenBank) RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xft
Xylella fastidiosa Temecula1
Pathway
xft03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xft00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PD_2000 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xft03021
]
PD_2000 (rpoC)
03400 DNA repair and recombination proteins [BR:
xft03400
]
PD_2000 (rpoC)
Enzymes [BR:
xft01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PD_2000 (rpoC)
Transcription machinery [BR:
xft03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PD_2000 (rpoC)
DNA repair and recombination proteins [BR:
xft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PD_2000 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AAO29829
UniProt:
Q87A33
LinkDB
All DBs
Position
complement(2355881..2360104)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIGLASPALIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGCIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLQARQEHADDFDASM
GAEAVYELLRMIDLQSEMARLREEIVVTGSETKLKRLTKRIKLIEAFIESGNRPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLCRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSARSVIIVGPN
LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKGAKKLVEREEAEVWDILEEVISEHP
VVLNRAPTLHRQGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSELKRAYDNS
VVELHAKVKVRITEIETDDQGLRNKASSIVDTTVGRALLSEILPEGLPFVLVNTEMTKKN
ISRLINSSYRMLGLKETVVFADKLMYTGYAYATRAGVSICIDDMLIPIEKKEILGEAEQE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTERVVNADGEIVDQKSMN
SLYIMADSGARGSPQQIRQLAAMRGLMVRPDGSIIETPIKANFREGLSVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLCVVQLDCGTAGGLTMTPIVEGGDVVEPLKDRVL
GRVVAEDVLLPGNDDEPIVTRSTLLDEQWVAKLEEAGVQSVKVRSPITCESPFGVCALCY
GRDLARGHLVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTALSAAAIDNITVKTSGSVK
FTNLKYVEHANGTLVAVSRSGEISVLDTHGRERERYKLPYGATINVKDMAEVKSGQILAN
WDPHNHPIVSEVAGFVRFIDFVDGVTVIEKTDDLTGLSSREIADLKRRGSQGKDLRPLVR
IVDKKGNDLTIPGTDLSAQYLLPPRSIVNLQDGAPVGIGDVVAKIPQEASKTRDITGGLP
RVADLFEARRPKDPAILAERSGVISFGKDTKGKQRLIIKDADGSEHEELIPKYRQIIVFE
GEHVTKGETIVDGEPSPQDILRLLGIEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEIVDQGNSKFLNGEQVERQRVIDENAKLIARNELPAKYNPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGQTYHSQRRYSSVGLTESE
METLVGRSTSSGTEVTSPSKDAIPLGG
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatctactcaatctttttaatcagcagcgccagacattggatttcgatgccatc
aagattggccttgcctcgcctgccttgattagatcttggtcgttcggtgaagtgaagaag
ccggaaacaatcaactaccgcacttttaagcctgagcgtgatggtttgttttgtgctgct
atctttggtcctatcaaggactatgaatgtttatgtggcaaatataagcgcatgaagcat
cgaggggtggtctgtgagaaatgtggtaccgaggtgactttagcaaaagtacgccgtgag
cgtatgggttgcattgagctagcttcgcctgttgctcatatttggttcttaaaatcgcta
ccttcacgcattggattgatgctggacatgactttacgtgatatcgagcgtgtcttgtac
ttcgaagcctatgtagtgactgagccgggtctaactcctttagaacggcgtcagctccta
accgaagaacaatatttgcaagcccgtcaagaacatgctgatgacttcgatgcttctatg
ggagccgaagctgtatacgaactcttgcgaatgattgacttgcaatcggagatggctcgt
ttgcgtgaggaaatcgttgtcactggttctgagactaagctgaaacgtttgactaaacgt
attaagctgattgaagcgtttatcgaatctggcaatcgtccggaatggatgattttgacc
gtgttgcctgtactacccccagacctgcgtccgctggtgccgttggacggtggtcgcttt
gcaacctctgatcttaatgacctgtaccgtcgagtcattaatcgtaacaatcgtctgtgc
cgcttattggagttaagtgctcctgacatcatcgtgcgcaacgagaagcgcatgttgcag
gaatcagtcgacgcgttgctagacaacggtcgtcgtgggcgtgctattactggtactaat
aagcgtcccttaaaatcgttagcggacatgattaagggtaaacagggtcgttttcgccaa
aatttgcttggaaagcgtgtcgattactctgctcgttcagtgattatcgtaggccctaat
cttcggttacaccaatgtggattaccgaaaaaaatggcgcttgagctattcaaacctttt
gtgtttgctaagctgcagcgtcgcggcttggctactacgattaagggagctaaaaaacta
gttgagcgtgaagaagccgaggtctgggatattcttgaagaggttatttctgagcatcct
gtggtattgaatcgtgcgccaactttacatcgccagggtattcaagcctttgagccagtt
ttaattgaaggtaaagcgattcagttacatccgttagtttgtactgcattcaatgcagat
ttcgatggcgatcagatggccgtgcatgtgcctctttcgctcgaagctcagcttgaagcg
cgtgcgttgatgatgtctactaacaacatactgtctccagcgaatggtgagccgatcatc
gtaccatcacaggatgttgtacttggcttgtactacatgagccgtgcacttgaaaataag
aagggcgaagggatggtgttcgccaataccagcgagctgaaacgtgcttacgacaatagc
gttgttgaattgcatgctaaggtgaaggttcgtattacagagatagagactgatgatcaa
gggctgcgtaacaaggcttcttcgattgtagatactacggtaggtcgtgcattattgagt
gagattcttccagaaggtttgccgtttgttcttgtcaataccgaaatgactaaaaagaac
atttcgaggttgattaattcaagttatcgcatgcttggcttgaaggaaactgttgtattt
gcagataaattgatgtacacgggttatgcctatgcgacacgtgccggtgtgtcaatctgt
attgatgacatgctgattcctatcgaaaagaaagaaatattgggtgaagctgagcaagaa
gtgctcgagattcaggagcagtatcaatccggattggttaccgctggcgagcgttataac
aaagtggttgatatttggtcccgtactaatgaacggattgccaaggcaatgatggatacc
atcggcactgagagagtggttaacgccgatggtgaaatcgttgatcagaagtcgatgaat
tcgctctatatcatggctgattctggcgcgcgcggtagcccgcagcagattcgccaatta
gctgctatgcgtggtctaatggtacgtcctgatggctcgatcattgagacacccatcaaa
gctaactttcgtgaaggtttgagtgtccaggaatatttcaactctacgcatggtgctcgt
aaaggtttggctgatactgcattgaagacagcgaactctggttacctgactcgccgtttg
gttgatgtcactcaagatttatgtgttgtacagcttgattgcggcactgctggtggatta
actatgaccccgatcgttgaaggtggagatgttgttgagccacttaaggatcgcgtgtta
ggacgtgttgttgctgaggatgtattgctgcctggtaatgatgatgagcccattgtaact
cgtagcaccttgcttgatgagcaatgggtagctaagttggaagaggccggtgtgcagtca
gtgaaggttcgttctcctatcacatgtgagtctccgtttggcgtatgcgccctatgctat
ggtagggatctcgctcgtggtcatttggttaatatgggtgaagcagtaggtgtcattgct
gctcaatcaatcggtgaaccaggtacgcagttgacgatgcgtaccttccatattggtggt
accgcgttgagtgcagcagcgatagataacattactgtaaaaactagcggttcggtaaaa
tttactaatctaaagtatgttgagcatgccaatggtactttggttgcggtatctcgttcc
ggagagatttcggttctagatactcacggccgtgagcgtgaacgctacaagttaccttac
ggtgcaactataaatgtcaaggatatggctgaagtcaaatcagggcaaatcttggcaaat
tgggatccccacaatcacccaattgtttctgaagttgcaggttttgtccgttttatcgat
tttgttgatggtgtcactgtcattgagaaaactgatgatctgactggtttatcttcccgt
gagattgctgatctgaagcgccgtggttcccaaggtaaggatcttcgtcctttggtgcgt
atcgttgataaaaaaggtaacgatctgactattcccggtactgatctttcagctcagtat
ttgttgcctccgcgttcgattgttaatcttcaggatggtgctccagttggcatcggtgat
gtggtggctaagattccacaggaggcctccaaaactcgcgatatcactggcggtttgcct
cgggtggcggatctgttcgaagcgcgtaggccgaaagatcctgctattttggctgagcgt
tcaggggtgataagttttggtaaagacaccaaaggtaagcagcgattgattattaaagat
gccgatggaagcgagcacgaagagttgattcctaagtaccgtcaaattattgtgttcgag
ggagagcatgtcaccaagggggagaccattgtggacggtgagccgagtccacaggatatt
ttgcgtttactcggtatcgagccgttagctgcttacttggttaaagaaatacaggatgtg
tatcgtttgcagggtgtgaagatcaatgataagcatattgaagtcattacacggcaaatg
ttgcgcaaagttgagattgttgatcagggaaacagtaagttcctcaatggtgagcaagtt
gaacgtcagcgtgttatcgatgaaaacgcgaagttaattgcgcgcaatgaattaccagca
aagtacaatccagtgttactaggtattactaaggcttctttggcaacggaatcgttcatt
tccgcagcttctttccaagaaacgacccgtgtcttaactgaggctgcggtacgagggacc
agggataatttgcgtggtttgaaagaaaatgtcatcgttggtcgccttattccggctggt
actggccagacgtatcatagccagcgtcgctatagttctgttggtcttactgagtctgaa
atggaaaccttggttggtcgcagtacctcatctggtacagaagttacttcgccttccaag
gatgcgattcctcttggggggtaa
DBGET
integrated database retrieval system
