Xanthomonas citri pv. fuscans: XFF4834R_chr09720
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Entry
XFF4834R_chr09720 CDS
T03094
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xfu
Xanthomonas citri pv. fuscans
Pathway
xfu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xfu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XFF4834R_chr09720 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xfu03021
]
XFF4834R_chr09720 (rpoC)
03400 DNA repair and recombination proteins [BR:
xfu03400
]
XFF4834R_chr09720 (rpoC)
Enzymes [BR:
xfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XFF4834R_chr09720 (rpoC)
Transcription machinery [BR:
xfu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XFF4834R_chr09720 (rpoC)
DNA repair and recombination proteins [BR:
xfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XFF4834R_chr09720 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CDF60592
UniProt:
A0AB34Q226
LinkDB
All DBs
Position
1110895..1115109
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
VVELHAKVKVRITQVDVEAGGKRSSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKKN
ISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEIDCGTTEGLIMTPIVEGGDVVEPLRERVL
GRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARCY
GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FNNLKSVAHASGSLVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQSVAN
WDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAQAKELRPIVR
IVDAKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFE
GEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEIVDQGNSKFLNGEQVERQRVIEENARLVKRNELPAKYDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRRKASGLTDSEM
ETLSGKPAVAEPVAAVADAGADEE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaatcagcagcgccagacgctggatttcgatgcgatc
aagatcgcgctggcgtcgccggacctgatccgttcgtggtcctacggcgaagtgaagaag
cccgaaaccatcaactaccgtaccttcaagcccgagcgtgacggcctgttctgcgccgcc
atcttcggaccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggtaccgaagtcaccctggccaaggtgcgccgcgag
cgcatgggtcatatcgacctggcctcgccggttgcgcacatctggttcctcaagtcgctg
ccgtcgcgcattggcttgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctatgtcgtcaccgagccgggcctgaccccgctcgagcgccgccagctgctg
accgaagagcagtatctgaccgcgcgccaggagtacaacgacgacttcgacgccgccatg
ggcgccgaggccgtgtatgagctgctgcgcacgatcgacctgcaatcggaaatgacccgt
ctgcgcgaggaaatcgccagcaccggttcggaaaccaagctcaagcgtttgaccaagcgc
atcaagctgatcgaagccttcctggaatcgggtaaccgtccggagtggatggtcatgacc
gtgctgccggtgctgccgccggatctgcgtccgctggtgccgctggatggcggccgcttc
gcgacctcggatctgaacgatctgtaccgccgcgtgatcaaccgcaacaaccgtctgcgt
cgcctgctggagctcaatgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgtcgcggtcgtgccatcaccggcactaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactattccggccgttcggtcatcaccgtcggtccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgtttaagccgttc
gtgttcgccaagctgcagcgtcgtggcctggccaccacgatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaagtgattcgcgagcatccg
gtgctgttgaaccgcgcgccgaccctgcaccgcctgggcatccaggcgttcgagccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtctgtacggccttcaacgccgac
ttcgacggcgaccagatggctgtccacgttccgctctcgctggaagcccagctggaagcg
cgtgcgttgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgttgggtctgtactacatgagccgcgccctggagaacaag
aagggcgaaggcatggtgttcgccaacaccagcgaagtgaagcgcgcctacgacaaccgc
gtggtcgaactgcacgccaaggtcaaggtgcgcatcacccaggtggacgtggaagccggc
ggcaagcgcagtagcggcacctcgatcgtggataccacggtcggtcgtgcgctgctgagc
gaaatcctgcctgaaggcctgccgttccagctggccaacaccgagatgaccaagaagaac
atctcgcgcctgatcaactccagctaccgtctgctgggcttgaaggacaccgtcgtgttc
gccgacaagctgatgtacaccggctacgcctacgcgacccgcgccggcgtgtcgatcggt
atcgacgacatgctgatccccgacgagaagaagggcatcctcaccgaggccgaagccgaa
gtgctggaaatccaggagcagtaccagtcgggtctggtcaccgccggcgagcgctacaac
aaggtcgtggacatctggtcgcggaccagcgagcgcatcgccaaggcgatgatggacacc
atcggtaccgaaaaggtcgagaacgccaagggcgagaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcccgtggtagccaggcgcagatccgtcagctg
gccggtatgcgcggcctgatggcgcgcccggacggctcgatcatcgagacgcccatcaag
gcgaacttccgcgaaggcttgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctgaagacggcgaactccggttacctgacccgccgcctg
gtcgacgtggcgcaggacgtggtgatcaccgaaatcgattgcggcaccaccgaggggttg
atcatgaccccgatcgtggaaggcggtgacgtggtcgagccgttgcgcgagcgcgtgctg
ggccgcgtggtggccgaggacgtgtacctgccgggcaacgacgaagagccgatcgtcacc
cgcaacacgctgctcgacgaagcctgggtggccaagctcgaagacgccagcgtgcagtcg
gtgaaggtgcgttcgaccatcagctgcgaatcctcgttcggcgtgtgcgcacgctgctac
ggccgcgatctcgcacgtggtcaccaggtcaacatcggcgaagcggtcggcgtcatcgcc
gcgcagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggt
gcggcgtcgcgtgcggctgcggtggacaacatcaccgtcaagaccaccggttcggtcaag
ttcaacaacctcaagtcggtggcgcatgccagcggttcgctggttgcggtctcgcgttct
ggcgaactgtccgtgctcgatggccatggccgcgagcgcgagcgttacaagctgccgtac
ggcgcgaccatcaccgccaaagacggcgatgcggtcaaggccgggcagagcgttgccaac
tgggatccgcataaccacccgatcgtgtcggaagtggccggtttcatccgcttcatcgac
ttcgtcgacggcgtcaccgtcatcgagaagaccgacgagctgaccggtctggcgtcgcgc
gaaatcaccgacccgaagcgtcgcggcgcacaggccaaggagctgcgtccgatcgtgcgc
atcgtcgatgccaagggcaacgacctgacgattccgaacacggatctgccggcccagtac
ctgttgccgccgcgttccatcgtcaacctgcaggacggcgctgccgtcggcgtgggcgac
gtggttgccaagatcccgcaggaagcgtccaagacccgtgacatcaccggtggtctgccg
cgcgttgccgacttgttcgaagcacgtaagccgaaggacccggcgatcctggcagaacgc
tcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgcctgatcatcaaggat
accgatggttcggaacacgaagagctgattcccaagtaccgccagatcatcgtgttcgaa
ggcgaacacgtgaccaagggcgagaccgtggtggacggcgagccgagcccgcaggacatc
ctgcgcctgctgggtgtcgaaccgctggccgcttacctggtcaaagaaatccaggacgtg
tatcgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcactcgccagatg
ctgcgtaaggtcgagatcgttgatcagggcaacagcaagttcctcaacggcgagcaggtc
gagcgccagcgcgtcatcgaggaaaatgcccgcctggtcaagcgcaacgaactgccggcc
aagtacgatccggtgttgctgggtatcaccaaggcatcgctggccaccgagtcgttcatt
tcggcggcatcgttccaggagaccacccgcgtgttgaccgaggcagccgtgcgcggcacc
cgcgacaacctgcgcggtctgaaggaaaacgtgatcgtgggtcgcctgatcccggccggt
acgggtctggcgtaccacgccggacgtcgcaaggcctcgggtctgaccgactcggaaatg
gaaacgctgtcgggcaagccggcagtcgccgaaccggtcgccgcagtggccgacgctggc
gcggacgaggagtaa
DBGET
integrated database retrieval system
