Xanthomonas citri pv. fuscans: XFF4834R_chr22100
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Entry
XFF4834R_chr22100 CDS
T03094
Name
(GenBank) probable Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xfu
Xanthomonas citri pv. fuscans
Pathway
xfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XFF4834R_chr22100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfu03019
]
XFF4834R_chr22100
03009 Ribosome biogenesis [BR:
xfu03009
]
XFF4834R_chr22100
Enzymes [BR:
xfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XFF4834R_chr22100
Messenger RNA biogenesis [BR:
xfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XFF4834R_chr22100
Ribosome biogenesis [BR:
xfu03009
]
Prokaryotic type
rRNA processing factors
XFF4834R_chr22100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CDF61740
LinkDB
All DBs
Position
complement(2553710..2557369)
Genome browser
AA seq
1219 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY
GAERHGFLPLKEISRDYFQAGVDHNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ
EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVENR
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQLHTPH
YEVTRLRENELGEESGKPSYQRGTPRKLPVHALTKAQLNIPAAPAVTSIKPSQPAPVREE
APAPVAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPIAPAPESTPRPRQNDAGRNNR
SERGERGGQRRDARNGGNQQRGNGGNGNGANKERRDERRQPGNAQGAQNGAQAQQQVQVP
KPPRSEAQAPKPQQQKPKPQNQSPRPPRGPAQQDGAPAERQPRPARQDEGTAAAQTLTPT
AATATTSSVVSAIADAAAAAPTNAQTNANEAVQAHPVDVTVIESTADRGADANAAAPAPD
AAGDDAANGEGGSRRRRGRRGGRRRRRGAGANGEGGASVDGLDGDDLDSDADNDLDGDSE
GDDAGMQAHASAAPRAGQPEFDFDDEAPAPAVRAKPEPAAQATAKARPVPKERAEPQIGS
DTASTTAPVSNTVPASQPSATPGANADTARERPAAPVAATDATAKPAPAATASTVAGTDG
AAAQAAEQRPVTVAQQASATLAPIAAPAPVVSTPAAAVAPAAGAAPTAPVAAAVAPAPAV
ASPVTSNAATSSQQRPSAPATAAAPAAAQAAKPDQQQPAASADVETPPVQATPVQPARGT
PAEDLSAPAAASPASQAAVVTVTSPHAEQSASQTPSSEVAMTSTSTVVQASPSADTAPVR
KPYAPVQTTMLDALSPNDAAPAASSASKPPAAAPAAAQESQADKPKPTVIVSEAVKPVAP
SAEADQAQGDDSSKPRGDH
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgcaacgcaggccgaagagctgcgcgtggcgattgtggac
ggccagaccctgtacgacatcgacatcgaacagccgtccaaggaacaaaagaagtccaac
atctacaagggccgtattacccggcttgagccttccctggaagcggcgttcgtggactac
ggcgccgagcgtcatggcttcctgccgttgaaggaaatttcccgcgattatttccaggcc
ggcgtcgaccataacaagtcgaccattcgcgagcttctgcgcgaaggccaggaaatcgtg
gtgcaggtcgacaaggaagagcgtggcaacaagggagccgccctgaccacgttcatctcg
ctggccggccgctacatggtgctgatgcccaattcgccgagcgccggtggcgtttcccgc
cgcatcgagggcgaagaccgcgccgcgttgaaggaagcgctggacaagctcgacattccc
gacgacatgggcgtgatcatccgcaccgccggcgtgggccgcgatgccgaagaactgcag
tgggatctggactatttgctgcagacctggaaggcaattgccgaagctgcgctgagcaag
ccggccgcgttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactac
ctgcgcgccgatgtcggcgagatcctggtcgataccccggagctgtacgccgacgcccag
gagttcatgaagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgat
atcccgctgttcaatcgcttccagatcgaatcgcagatcgaaggcgcctatgagcgcaac
gtgcgcctgccctcgggcggctcgatcgtggtggaccagaccgaagcgctgaccgccgtg
gacgtgaactcctcgcgcgccaccaaggggagcgatatcgaagaaaccgcgttccagacc
aatctggaagcggcagaagaagtcgcacgccagctgcgcctgcgcgacctgggcggcctg
gtggtcatcgacttcatcgacatggcctcgtccaagcaccagcgcgaagtcgaaaacagg
ttgcagaacgcgctcaagtacgaccgtgcgcgcgtgcagttgggccgcatctcgcgtttc
ggcctgatggaaatgagccgtcaacggctacgtccgagcctgggcgaatccagccagatc
gtctgcccgcgttgcgacggccacggccgcatgcgcagcgtcgagtcgctgtcgctgtcg
atcatccgcgtggccgaagagcacgccatgaaggaaaacaccgggcaggtgctggtccag
gcgccggtagaaatcgccaactacctgctcaacgaaaagcgtagcgcgctgcgcgaaatc
gagcagcgccatgagtcgccgatcatcatcgtcgccgacgagcaactgcacaccccgcac
tacgaagtcacgcgcctgcgcgagaacgagctgggcgaagagagcggcaagccgagctac
cagcgcggcaccccgcgcaagttgccggtgcatgcactgaccaaggcgcagttgaatatt
cctgccgctccggcggtcacgtcgatcaagccgagccaaccggcaccggtgcgcgaagag
gcccctgccccggtcgcgcccgttgctgctccggcgccggtggtgaccgtgcccattccg
gcaccggtcactggcgtggtgggttggctgaagcggatcttcggcggcgtcgagccaatt
gccccggccccggagtcgaccccgcgtccgcgccagaacgatgccggccgcaataaccgt
agcgagcgcggcgagcgtggcggtcagcgtcgcgatgcccgcaacggtggcaaccagcaa
cgtggcaatggcggcaatggcaacggcgccaacaaggaacgccgtgacgagcgtcgtcag
cctggcaacgcccagggcgcgcagaatggcgcacaggcgcagcagcaggtgcaggtgccc
aagccgccgcgcagcgaagcgcaggcgccaaagccgcagcagcagaagcccaagccgcag
aatcagagcccgcgtccgccacgtgggcctgcacagcaggatggcgcgccggccgagcgt
cagccgcgtccggcacgccaggatgaaggcacggcagcggcgcagaccctgacccccact
gccgcaacggcaaccacgtcgagcgtggtgtccgccattgccgatgccgctgccgctgca
cccaccaatgcgcagaccaacgcgaatgaagcggtccaggcgcatccggtcgatgtcacc
gtgatcgaatccaccgctgatcgcggtgccgacgcgaatgcggctgcaccggctccggat
gccgcaggcgacgatgcagccaatggggaaggcggaagccgccgtcgccgcggccgtcgt
ggtggccgtcgtcgtcgtcgtggcgctggtgccaacggagaaggtggtgccagcgtcgat
ggtctggacggcgacgatctggacagcgatgccgacaacgatctcgatggcgacagcgaa
ggtgacgacgctgggatgcaggcgcatgcttcggccgcaccacgcgccggccagccggaa
ttcgacttcgacgacgaagcaccggcacccgcagtgcgcgccaagccagaacccgctgcc
caggcaaccgccaaggcacgtccggttcccaaggagcgtgcagagccacagatcggcagc
gatacagcctcgaccaccgcgccggtttccaataccgtgccggcatcgcagccgtcagca
acacccggtgccaacgctgacaccgcccgcgagcgccctgctgcgcccgtcgcggctacg
gacgcaactgccaaacccgcgccggctgccacagcgtcgacggttgccggcaccgatggt
gcggcagcgcaggccgcggaacagcgccccgtaacggtcgctcagcaggcatccgccacc
ctggcaccgattgccgctcccgcaccagtggtatccactccggcagctgcagtggctccc
gccgccggggcggcaccgacggcaccggtggcggctgccgtggctccggcaccggctgtt
gcatcgcctgtgaccagcaatgcagcgacaagcagccagcagcggccttcggcgccggca
actgcggctgcgcctgccgctgcccaggccgcgaagcccgaccaacagcaacccgctgcg
tcggcggacgttgaaacacctccggtgcaagccactccggtgcagccggcacgtggaacg
cctgctgaggacctctcggcacctgcggcagcttccccggcgtcgcaggccgcagtggtc
acggtgacgtcgccgcacgccgagcagtctgcttcgcagacgccatcttccgaggtggca
atgacctctacctcgacggttgtgcaggcaagcccgagtgcagacaccgcgcccgtgcgc
aagccgtatgctccggtgcagaccaccatgctcgatgcgctgagcccgaacgatgctgcg
ccagcggcctcctctgccagcaagcctccggcagcagcccctgcagcagcgcaggaatcg
caggcagacaagcccaagccgacggtgattgtgtccgaagcagtcaagccagttgctcca
tcggccgaagccgaccaggcgcagggggacgacagcagcaagccgcgtggcgatcactga
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