Xanthomonas citri pv. fuscans: XFF4834R_chr35040
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Entry
XFF4834R_chr35040 CDS
T03094
Symbol
rhlE2
Name
(GenBank) Probable ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xfu
Xanthomonas citri pv. fuscans
Pathway
xfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XFF4834R_chr35040 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfu03019
]
XFF4834R_chr35040 (rhlE2)
Enzymes [BR:
xfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XFF4834R_chr35040 (rhlE2)
Messenger RNA biogenesis [BR:
xfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XFF4834R_chr35040 (rhlE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
CDF62934
UniProt:
A0AB34QDL7
LinkDB
All DBs
Position
4067119..4068501
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AA seq
460 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGDRAPRKIHARRPHGDAPRQAHA
HAGPKKPGGQRSNGPRQANTGAGAGRRDGGRGGQRPSGTR
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctgggccttgcgcccttcctgctgcgcgcgttggccgagcagggc
tacgaaacccccaccccgatccagcagcaggcgatcccgttggtcctggccggtcacgac
ctgctggccggcgcgcagaccggcaccggcaagaccgctgccttcggcctgccgctgctg
caacacctgggcaccgcgccgcagaccgtcaacggcccgcgcaagccgcgcgcgctgatc
ctgacccccacccgcgaactggccacccaggtgcacgacagcctgcgcggctacagcaag
tacctgcgcatccccagcgcggtgatctatggcggcgtgggcatgggcaaccagctcgat
gcgctgcgtcgtggcgtggacctgctgatcgcctgcccgggccgcctgatcgaccatatc
gaacgtcgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgaccgc
atgctcgacatgggcttcttgccctccatcaagcgcatcctgaccaagttgccgcgccag
gatcgtcaaacgctgctgttctcggcgaccttcgaagagaacatcaagcagctggcgctg
gagttcatgcgcaacccgatgcagatccaggtcaccccgagcaataccgtggccgagagc
atcacccaccgcgtgcacccggtcgacggcgcgcgcaagcgcgacctgctgctgcacctg
ctggcgcaggacagccgcgagcagaccctggtcttcgcccgtaccaagcacggcagcgac
aagctggcgctgttcctggagaagtccggcatcaagaccgcggcgatccacggcaacaag
agccagggtcagcgcatgcgtgcgctgagcgacttcaaggccggccgcgtgaccgtgctg
gtggccaccgatatcgccgcgcgcggtatcgatatcgatcagctgccgaaggtcatcaac
tacgatctgccgatggtggccgaggactacgtgcaccgcatcggccgcaccggccgtaac
ggctcaaccggcgaggcgatttcgctggtggcgcaggacgaagccaagctgctgcgccag
atcgtgcgcatgctgggccgcgatgtggaaatccgcgacgtgccgggctacgagccgcag
accccgatccgctggggcaacagcgcgccgggtcgtgccgagcagccgggtggtgatcgc
gcgccgcgcaagatccacgcccgtcgtccgcacggcgatgcaccgcgtcaggcgcacgcg
catgccggcccgaagaagcccggtggccagcgcagcaacgggccgcgtcaggccaacact
ggcgcgggtgcaggccggcgcgatggtggtcgtggtggtcagcgtccgagcggtacgcgc
tga
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