Xanthomonas citri pv. fuscans: XFF4834R_chr36800
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Entry
XFF4834R_chr36800 CDS
T03094
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 (sigma D) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
xfu
Xanthomonas citri pv. fuscans
Pathway
xfu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xfu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
XFF4834R_chr36800 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xfu03021
]
XFF4834R_chr36800 (rpoD)
Transcription machinery [BR:
xfu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
XFF4834R_chr36800 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
CDF63103
UniProt:
A0AAX2HGS1
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Position
complement(4256671..4258548)
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AA seq
625 aa
AA seq
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MANERPAQQSDIKLLISKGLEQGYLTYAEVNDHLPDDLVDPEQIEDIISMINGMGIDVHE
VAPDAETLLLNDGNTGNREVDDTAAEEAAAALTALDTEGGRTTDPVRMYMREMGTVELLT
REGEIAIAKRIEEGLSQVQAALGVFPLSTEMLLADYEAHKEGKKRLAEIVVGFNDLIEEA
DAAAAALAAAGPVAVSDDEAVDEDDDEDGDDDAAEEEAGPTGPDPVEVATRMENLANEYA
KFKKVYAKNGAEHKLVVKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLH
LATTVARMPRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALRDVKDQIISEQQGSIEMEK
ANYLTLGEIKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ
MLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVE
SPIDNTTNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQ
IEAKALRKLRHPSRSEQLRSFLDID
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcctgcccagcaatccgacatcaagctactgatcagcaagggcctg
gaacagggctatctgacctacgccgaagtcaatgaccatctacccgacgacctcgtcgac
ccggagcagatcgaagacatcatcagcatgatcaacggcatgggcatcgatgtccatgaa
gttgcacccgatgccgaaaccctgttgctcaacgacggcaacaccggcaaccgcgaggtt
gacgacaccgcagccgaagaagctgccgccgcgctgaccgcgctcgacaccgaaggtggc
cgcaccaccgacccggtgcgcatgtacatgcgcgaaatgggcacggtcgagctgctgacc
cgcgaaggcgaaatcgccatcgccaagcgcatcgaagaaggcctgagccaggtccaggcc
gcgttgggcgtgttcccgctgtcgaccgaaatgctgctggccgactacgaagcgcacaag
gagggcaagaagcgtctggccgagatcgtggtcggcttcaacgacctgatcgaagaagcc
gatgccgccgctgctgctctcgccgcggccggcccggtcgccgtgtccgacgatgaagca
gtcgacgaagacgacgacgaagacggcgatgacgacgccgccgaagaagaggccggcccg
accggtccggaccctgtggaagtagccacgcgcatggagaacctggccaacgaatacgcc
aagttcaagaaggtctatgccaagaacggcgccgagcacaagctggtggtcaaggcgcgc
gaagacatggccgccatcttcaccacgctcaagctgccgctgccgttgaccgacgcgctg
gtcacccagctgcgtggcgtggtcaatggcatcaaggaccacgagcgcaaggtgctgcac
ctggccaccaccgtggcccgcatgccgcgcaaggatttcatccgctcctgggaaggcaac
cagaccaacctggaatgggtggaggacgcactcaagcgcaagcagaagtggtcatcggcg
ctgcgcgacgtcaaggatcagatcatctccgagcagcagggctcgatcgagatggaaaag
gccaattacctgaccctgggcgaaatcaaggaaatcagccgtgcgatggcctatggcgaa
gccaaggcgcgcaaggccaagaaggaaatggtcgaagccaacctgcgtctggtgatctcc
atcgccaagaagtacaccaatcgcggcctacagttcctcgacctgatccaggaaggcaac
atcggcctgatgaaggccgtggacaagttcgaataccgtcgcggttacaagttctcgacg
tatgccacgtggtggatccgtcaggccatcacccgttcgatcgccgatcaggcccgcacc
atccgtattccggtgcacatgatcgaaacgatcaacaagttgaaccgcatttcccgccag
atgctccagcagttcggccgcgaggccacgccggaggagctggccaaggaaatggacatg
cccgaggacaagatccgcaaggtgatgaaaatcgccaaggagccgatctcgatggaaacc
ccgatcggcgacgacgaggattcgcatctgggcgacttcatcgaggacaccaatgtggag
tccccgatcgacaacaccaccaacatcaatctctccgagacggtgcgtgacgtgttggcc
ggcctcaccccgcgcgaggcgaaggtactgcgcatgcgcttcggtatcgacatgaacacc
gatcacacgctggaagaggtcggtaagcagttcgacgtcacccgcgagcggattcgtcag
atagaggccaaggcattgcgcaagctgcgtcacccgagccgttcggaacagctgcgctcg
tttttggatatcgactga
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