Xanthomonas citri pv. fuscans: XFF4834R_chr36990
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Entry
XFF4834R_chr36990 CDS
T03094
Symbol
topA
Name
(GenBank) probable DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xfu
Xanthomonas citri pv. fuscans
Brite
KEGG Orthology (KO) [BR:
xfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xfu03032
]
XFF4834R_chr36990 (topA)
03400 DNA repair and recombination proteins [BR:
xfu03400
]
XFF4834R_chr36990 (topA)
Enzymes [BR:
xfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
XFF4834R_chr36990 (topA)
DNA replication proteins [BR:
xfu03032
]
Prokaryotic type
DNA Topoisomerases
XFF4834R_chr36990 (topA)
DNA repair and recombination proteins [BR:
xfu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
XFF4834R_chr36990 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
CDF63122
LinkDB
All DBs
Position
4278118..4280610
Genome browser
AA seq
830 aa
AA seq
DB search
MPKHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKN
EKHVEAIARAAKGADDIFLATDPDREGEAISWHIAEILKERGLLKDKPMQRVVFTEITPR
AIKEAMAKPRMIAGDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV
EREEEIEAFIPREYWSIDAHCRHPSQAFSARLIKLDGQKFEQFTVTDGDTAEAARLRIQQ
AAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGVALGDE
GSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQPNAYTTKSKNAQEAHEAVRP
TSALRTPAQVARFLSEDERRLYELIWRRAVACQMIPATLNTVSVDLSAGSEHVFRASGTT
VVVPGFLAVYEEGKDTKSSEDEDEGRKLPLMKAGDNVPLDRIVTDQHFTQPPPRYTEAAL
VKALEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSKFLSGHFTRYVDYDF
TANLEDDLDAVSRGEAEWIPLMEKFWGPFKELVEDKKDSLDKTDAGSVRVLGTDPVSGKE
VSARIGRFGPMVQIGTVEDEDKPTFASLRPGQSIYSISIEDALELFKMPRALGQDKDQDV
SVGIGRFGPFARRGSTYASLKKEDDPYTIDLARAVFLIEEKEEIARNRVIKEFDSSDIQV
LNGRFGPYISDGKLNGKIPKDREPASLTFEEVQQLLADTGKPVRKGFGAKKATLKKNTVK
DSAPKKPAVKKTATKTAASKTAVKKAPAKKTATKKAAKRVVKKTVSKAAG
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcacctgctcatcgtcgaatcgcccgccaaggccaagacgatcaataaatac
ctcggcaaggacttcaccgttctggcctcgtatgggcacgtgcgcgacctggtccccaag
gaaggcgcggtcgatccggacaacggctttgcgatgcgttacgacctgatcgagaagaac
gaaaagcacgtcgaagccatcgcgcgtgccgccaagggtgccgacgacatctttctggcg
accgacccggaccgcgagggcgaggcgatcagctggcacatcgccgagatcctgaaggag
cgcggcctgctcaaggacaagccgatgcagcgggtggtgttcaccgaaatcaccccgcgt
gcgatcaaggaggcgatggccaagccacgcatgatcgccggcgacctggtggatgcgcag
caggcgcgccgcgcgctcgattacctggtcggcttcaacctgtcgccggtgctgtggcgc
aaggtgcagcgcggcctgtccgctggccgcgtgcaatcgccggcgctgcgcatgatcgtc
gagcgcgaagaagagatcgaagccttcatcccgcgcgaatactggtccatcgatgcgcat
tgccggcatccctcgcaggcgttcagcgcgcgactgatcaagctggatgggcagaagttc
gagcagttcaccgtgaccgacggcgacaccgccgaggcggcgcgcctgcgcatccagcag
gccgcgcaaggcgtgctgcatgtcaccgacgtggccagcaaggagcgcaagcgccgccct
gccccgccgttcacgacctccacgctgcagcaggaagcctcgcgcaagctcggcttcacc
acccgcaagaccatgcaggtggcgcagaagttgtacgaaggcgtggcactcggcgacgaa
ggctcggtcggtctgatcagctacatgcgtaccgactcggtgaacctgtcgcaggacgcg
ctggcggaaatccgcgatgtgatcgcgcgggacttcggcaccgcttcgctacccgaccag
cccaacgcctacaccaccaaatccaagaacgcgcaggaagcccacgaagcggtgcgcccg
acctccgcgctgcgcaccccggcgcaggtggcgcgtttcctgtccgaggacgagcgccgc
ctgtacgagctgatctggcgccgcgcagtggcctgccagatgattccggccacgctcaat
accgtcagcgtggatctgtcggccggcagcgagcacgtgttccgcgccagcggcaccacc
gtggtggtcccgggcttcctggccgtgtacgaagaaggcaaggacaccaagagcagcgag
gacgaggacgaaggccgcaagctgcctttgatgaaggccggcgacaacgtcccgctggac
cgcatcgtcaccgaccagcatttcacccagccgccgccgcgctacaccgaagcggcgctg
gtcaaggcgctggaggagtacggcatcggccgtccgtccacctatgcctcgatcatccag
accctgcagttccgcaaatacgtggaaatggaaggccgcagcttccgtcccaccgacgtg
ggccgtgcggtgtccaagttcctgtccgggcatttcacccgctatgtcgattacgacttc
accgccaatctggaagacgatctggacgcggtctcgcgcggcgaagccgagtggatcccg
ttgatggagaagttctggggcccgttcaaggaattggtcgaagataagaaggactcgctg
gacaagaccgatgccggcagcgtgcgcgtgctcggcaccgacccggtcagcggcaaggaa
gtcagcgcacgcatcggtcgcttcggcccgatggtgcagatcggcacggtcgaagacgag
gacaagcccaccttcgcgtcgctgcgtccgggccagagcatctattcaatctccatcgaa
gatgcgctggagctgttcaagatgccgcgcgcgctgggccaggacaaggaccaggatgtc
agcgtgggcatcggccgtttcggcccgttcgcgcgccgcggcagcacctatgcctcgctg
aagaaggaagacgacccctacaccatcgacctggcgcgcgcggtcttcctgatcgaagag
aaggaagagatcgcacgcaaccgggtgatcaaggaattcgacagcagcgacatccaggtg
ctcaacggacgcttcggcccatacatcagcgacggcaagctcaatggcaagatccccaag
gaccgtgagccggcgtcgttgacgttcgaagaagtgcagcagctgctcgccgacaccggc
aagccggtacgcaagggctttggcgccaagaaggccaccctgaagaagaatacggtcaag
gattcggcaccgaagaagcctgccgtcaagaagaccgcgaccaagaccgcggccagcaag
accgctgtcaagaaggccccggccaaaaagacggccaccaagaaggccgccaagcgcgtg
gtcaagaaaaccgtgagcaaggccgcaggctga
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