Xanthomonas citri pv. fuscans: XFF4834R_chr40210
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Entry
XFF4834R_chr40210 CDS
T03094
Symbol
uvrD
Name
(GenBank) probable DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
xfu
Xanthomonas citri pv. fuscans
Pathway
xfu03420
Nucleotide excision repair
xfu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XFF4834R_chr40210 (uvrD)
03430 Mismatch repair
XFF4834R_chr40210 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xfu03400
]
XFF4834R_chr40210 (uvrD)
Enzymes [BR:
xfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XFF4834R_chr40210 (uvrD)
DNA repair and recombination proteins [BR:
xfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XFF4834R_chr40210 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
XFF4834R_chr40210 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_12
InPase
Motif
Other DBs
NCBI-ProteinID:
CDF63421
LinkDB
All DBs
Position
complement(4644972..4647143)
Genome browser
AA seq
723 aa
AA seq
DB search
MLDHLNPAQREAVSAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNK
AAGEMRHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKR
VVQALELDESKYPPKQMSWWINEQKDEGRRPQHIQPEPNDDWTEVRRQVYAAYQERCDRS
GLLDFAELLLRAHELLRDTPALLAHYRARFREILVDEFQDTNAIQYAFVRVLAGESGNVF
VVGDDDQAIYGWRGAKVENVQRFLKDFPGAQTVRLEQNYRSSANILGAANAVIAHNPDRI
GKQLWTDSGDGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAQSRALE
EALISEQLPYRVYGGMRFFERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLD
EVRRLARASALSLWEAAMLCTQQNTLAARARNALATFLSLIGQLHAETGEMELAERIDHV
LMRSGLREHWAKESRGGLDSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASL
EAGEGQAQAGEEGVQLMTLHSAKGLEFPIVFLVGLEDGLFPSARSLEESGRLEEERRLAY
VGITRARQKLVLCYAESRRIHGQDNYNVPSRFLREIPRDLLNEVRPKVQVSRTASLGAAR
GGPVHGIVETAPIKLGANVEHPKFGGGVVVDYEGAGAHARVQVQFDEVGAKWLVMAYANL
TVV
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgatcatttaaaccccgcccagcgcgaggccgtttctgcgccgccggggcactac
ctcgtgctggccggcgccggctccggcaagacgcgcgtgctgatccatcgcatcgcctgg
ctcaatgaagtccagggcgtgcccaaccacggcatcttcgcggtgaccttcaccaacaag
gccgccggcgaaatgcgtcaccgcaccgacctgcagctgcgcaatggcagccgcgggatg
tggatcggtacatttcacgggctggcacatcgcctgttgcgtctgcattggcaggatgcg
cggctgccggaaggcttccaggtcatggacagcgacgatcagttgcggctggtcaagcgc
gtggtgcaggcgctggagctggacgagagcaagtatccgcccaagcagatgagctggtgg
atcaacgagcagaaggatgagggccgccgtccgcaacatatccagcccgagcccaacgac
gattggaccgaggtgcgccggcaggtgtatgcggcctaccaggaacgctgcgaccgctcc
gggctgctggattttgccgagttgctgctgcgcgcgcatgagttgctgcgcgacacgccc
gcgttgctggcgcattaccgcgcgcgctttcgcgagattctggtggatgagttccaggac
accaacgccatccagtacgccttcgtgcgcgtgctggccggcgaatcgggcaatgtgttc
gtggtgggcgacgacgaccaggccatctatggctggcgcggtgccaaggtcgaaaacgtc
cagcgctttctgaaggatttccccggtgcgcagaccgtgcggctggagcagaactaccgc
tccagcgcgaatattctgggcgctgccaatgcggtgattgcgcacaacccggaccgtatc
ggcaaacagctgtggaccgattccggcgatggcgacccgatcgatctgtacgcggcctac
aacgaagtggacgaagcgcgctatgtggtggagcgtgcacggcagtgggtgcgcgacggc
ggcagttatggcgaagtggcggtgctctaccgcagcaacgcgcaatcgcgcgcgctggaa
gaagcgctgatttccgagcagctgccgtaccgcgtgtatggcggcatgcgcttcttcgaa
cgtgccgaaatcaaggacgcgttggcttacttgcgcctgctgaccaatcgcagcgacgac
gctgcgttcgaacgcgcggtcaacacgcccacgcgcggcattggcgaccggacgctggat
gaggtgcgccggctggcacgtgccagtgcgctgtcgttgtgggaagcggcgatgctgtgc
acgcagcagaacacgctggccgcgcgcgcgcgcaatgccctggcgaccttcctcagcctg
atcggccagctgcatgccgaaaccggcgagatggaactggccgaacgcatcgaccatgtg
ctgatgcgctcgggcctgcgcgagcattgggccaaggaaagccgcggcgggctggattcg
gaatcgcgtaccgagaacctggacgaactggtgtcggtcgcctcacgcttcacccgcccg
gacgatgaagacagccagggcatgaccgagctggtcgccttcctggcttacgcctcgctg
gaggccggcgaaggccaggcgcaggctggcgaagagggcgtgcagctgatgacgctgcat
tcggccaagggcctggaatttccgattgtgttcctggtcggcctggaagacggcctgttc
ccgagtgcgcgttcgctggaagagagcgggcggctggaagaagagcgtcgcctggcgtac
gtgggcatcacccgcgcgcggcagaagctggtgctgtgctacgccgaatcgcgccgtatc
cacggccaggacaattacaacgtgccctcgcgcttcttgcgtgagattccgcgcgacctg
ctcaacgaagtgcgcccgaaggtgcaggtttcgcgcaccgcatcgctgggcgcggcgcgc
ggcggcccggtacatggcatcgtggaaacggcaccgatcaagctcggcgccaacgtcgaa
caccccaagttcggcggcggcgtggtcgtcgattacgaaggcgctggcgcgcatgcgcgc
gtgcaggtgcagttcgacgaggtcggcgccaagtggctggtgatggcctatgccaatctg
actgtggtctag
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