Xanthomonas citri pv. fuscans: XFF4834R_chr42160
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Entry
XFF4834R_chr42160 CDS
T03094
Symbol
recC
Name
(GenBank) probable exodeoxyribonuclease V gamma chain
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
xfu
Xanthomonas citri pv. fuscans
Pathway
xfu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XFF4834R_chr42160 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xfu03400
]
XFF4834R_chr42160 (recC)
Enzymes [BR:
xfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XFF4834R_chr42160 (recC)
DNA repair and recombination proteins [BR:
xfu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XFF4834R_chr42160 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Nod_GRP
Motif
Other DBs
NCBI-ProteinID:
CDF63598
LinkDB
All DBs
Position
complement(4899752..4903291)
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AA seq
1179 aa
AA seq
DB search
MRSIGIFRAAPVRDAVRPLRLSVATSAPTRRQTTPHARIRHNAPRMHATSAPDFRLYPSN
ALDTLAALLAQELRRPMPGQPLLQPEVVLIPQVAMRRWLQSTLAAEHGVAANLEFLTPGE
FVARALERNLGAADDDLDMATTQWRLYAALQSDLGSDAALAPLAGYLSDGDALKPWALAG
ELASVFEKYQAWRRDWLLRWEAGADPDDPQARLWRSIAAGRQYRARRIGQYLDRYARADG
PLPQGLPPRVFAFAILNISPDVLRVLATQARVGTLHFYLPTPTQGYWGDLQTLRQRRRED
GAMQLFAEQVQENPLLQAWGAAGRDFMALVGDYEVVHPLAEIAAYADPLDSGRRTLADGG
LGDSLLRHMQSDLFHRRGPAADARLPAVNLHDPSLQVHACHTRLRELQVLHDQLRALLDD
ARFDPPLQPREIAVLSPNIDPYVPYLDAVFGSHGNDDALPYALADASPLASEPLAEVFLT
LLGLPIARFGLHEILDLLASAPIAEAAGLDEAGLERLRNWLHAAGARWGLDAAHRRQHQA
PGDDAYTWRFALDRLLLGHASGSDEDIDGVAPWPQLEGSALAALDTLLRLLRVLERHQAA
LAEAMTPVEWRERLLGLLEALMPTTPTAPRAQRALDRLRTLIDQFARDAVRAEYAGKVPA
EVVRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRVICLLGMNDGDFPRRDPAAGL
NRLTAELGTERRRHGDRSTREDDRFLFLQLFASAQEVFYLSYLGADARDGSVREPSVLVS
ELLASAAQYHAASNALDTLVVRHPLQPFAAAAFGALGDDGADPRRFSYRRQWRPAVDSLV
GQRQPLAPWVAGALPAEEIALPTSMSIDALRRLLTDPAGQFLRHRLGMRLPDPAGEDSDL
EPLLAPTRGLDQYGLQQQVFEAALAGDIEHLYERLRARALLPSGPLGRRQLDERVAQLRP
YADAFRQWRGQSPAQSRRLQVQIGEIELHGRLPGWYASGVGRVQVGALSGRSAIGHGLEW
LLLRAAGEHAPYVRFFEHDDGLGPHPIDAQPLSQTQAQTALAELLQLYRQGLQTPLAFAP
YSSWKYHQAARGGDLDRAIKEAAGQWQSGFGWSESHSPELRLVTRGRDPFADAQRFAEFA
ATSHRVYALLEQGHTGAPLETERVIDSWRHWHGAQEDAE
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgcggtcgatcggcatctttcgcgcagcgccggtgcgcgatgccgtgcgacctttgcgc
ctcagcgtggccacctcggcgccgacacggcggcaaacaacgcctcacgcgcgcatccgg
cacaatgcgccacgcatgcacgccacttccgcgcccgatttccgtctttatccatccaat
gcgctggataccttggccgccttgctcgcgcaggaattgcgccggccgatgcccgggcag
ccgttgctgcagccggaggtggtgctgattccgcaggtggcgatgcggcgctggttgcag
tccacgctggcggccgagcacggtgttgcggcgaatctggaatttctcacgcccggcgaa
ttcgtcgcgcgcgcgctggagcgcaacctcggcgcggccgacgacgacctggacatggcc
accacgcagtggcggttgtatgcggccctgcaatcggacctgggcagcgatgctgcgttg
gcgccactggccggctatctgtccgacggcgatgcgctcaagccgtgggcgctggccggc
gagctggccagcgtgttcgaaaaataccaggcatggcgccgcgactggctgctgcgctgg
gaagcgggcgctgacccggacgacccgcaggcacggttgtggcgcagcatcgccgccggc
cggcaataccgcgcacggcgcatcggccagtatctggatcgctacgcgcgtgccgatggt
ccgttgccgcaaggcctgccgccgcgcgtgttcgcgttcgccatcttgaacatctcgccg
gacgtcttgcgcgtgctggccacgcaggcgcgcgtgggtacgctgcacttctatctgccc
actccgacgcagggctactggggcgacctgcagaccttgcggcaacgccggcgcgaagac
ggcgccatgcaactgttcgccgagcaggtgcaggaaaacccattgctgcaggcctggggc
gcagccgggcgcgacttcatggcgctggtgggcgattacgaagtggtgcacccgctggcg
gaaattgccgcctacgccgacccgttggactccggtcgccgcacgctggccgatggcggg
ctgggtgacagcctgttgcggcacatgcagagcgatctgttccatcgccgcgggcctgca
gccgacgcgcgattgccggcggtgaatctgcacgaccccagcctgcaggtgcacgcctgc
cacacgcggctgcgcgagttgcaggtattgcacgaccagctgcgcgcgctgctcgacgac
gcgcgcttcgacccgcccctgcagccgcgcgagatcgcggtgctgtcgcccaacatcgac
ccgtacgtgccgtatctggatgcagtgttcggcagccatggcaacgatgacgcgctgccc
tatgcgctggccgatgccagcccgctggcgagcgaaccgctggccgaagtgttccttacc
ttgctcggtttgccgatcgcgcgtttcggcctgcatgaaatcctcgacctgctggccagc
gcgccgatcgccgaagccgccggcctggacgaagccgggctggaacgcctgcgcaattgg
ctgcacgccgccggcgcgcgctggggcctggatgcggcgcaccggcgccagcaccaggca
ccgggcgacgatgcctacacctggcgtttcgcgctggaccggctgctgctcggccatgcc
agcggctccgacgaggacatcgatggggtggcgccgtggccacagctggaaggcagcgca
ctggccgcactcgacaccttgttgcggctgttgcgcgtgctcgaacggcatcaagccgcg
ctggccgaggcgatgacaccggtcgagtggcgcgagcgtttgctgggcctgctcgaggca
ttgatgccgaccacgccgactgcgccgcgcgcgcaacgcgcactggatcgcttgcgcacc
ttgatcgaccagtttgcccgcgatgcggtacgcgccgagtacgccggcaaggtgccggcc
gaggtggtgcgtgcgcattttgccgcggtgctgggtgaatcggatacgcgtgcgccgctg
ctcaccggcggcatcagtttcgggcgcatggtgccgatgcgcttgctgccgttccgcgtg
atctgcctgctcggcatgaacgacggcgacttcccgcgccgcgacccggccgccgggctc
aatcgcctcaccgcagaactgggcaccgagcgtcgccggcacggcgaccgttccacgcgc
gaggacgaccgtttcctgttcctgcagttgttcgcctccgcgcaggaggtgttttatctc
agctatctcggtgccgatgcgcgcgatggcagcgtgcgcgagccgtcggtgctggtcagc
gaattgctggcaagcgctgcgcagtaccacgccgccagcaacgcgctcgacacgctggtg
gtgcggcacccgttgcagccattcgccgctgctgcgttcggtgcgctgggcgacgacggc
gccgacccgcgccgtttcagttatcgccggcaatggcggccggcggtggacagcctggtc
ggccagcggcagccgctggcgccgtgggtggccggtgcattgccggccgaagagatcgcc
ttgccgaccagcatgtccatcgacgcgctgcgccgcttgttgaccgatccggccgggcag
ttcctgcgtcatcggttgggcatgcgcctgcccgatccggccggcgaggacagcgatctg
gaaccgttgctcgcacccacgcgcgggctggatcaatacggcttgcagcagcaggtattc
gaagccgccctggccggcgacatcgagcacctgtacgagcgtctgcgcgcgcgtgcgctg
ctgccgtccggcccgctggggcggcgccagctcgacgagcgcgtggcgcaattgcgcccg
tatgccgacgcattccggcagtggcgtggccagtccccggcccagtcgcgccggctgcag
gtgcagattggcgagatcgaactgcacggccgtcttccgggctggtacgcaagcggcgtg
gggcgcgtgcaggtcggcgccctcagcggtcgcagcgctattggtcatggtttggaatgg
ctgctgctgcgcgccgccggcgaacacgcgccatacgtgcgtttcttcgaacacgacgac
ggcctgggcccgcatcccatcgatgcacaaccgctgtcgcaaacgcaggcgcagacagcg
ttggccgagctgctgcagctgtatcgccagggcctgcagacaccgctggccttcgcgccg
tacagcagctggaaatatcaccaggccgcgcgcggcggcgacctggacagggccatcaag
gaggcggcagggcaatggcaatcgggctttggctggagcgaatcgcacagtccggaactg
cgcctggtcacccgcggccgcgacccgtttgccgacgcgcaacgctttgccgagttcgcc
gccaccagccaccgtgtgtatgcattgctcgaacagggacacaccggcgcaccgctcgag
accgagcgcgtgatcgacagctggcggcattggcacggcgcgcaggaagacgccgaatga
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