Xanthomonas hortorum pv. gardneri: BI317_02020
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Entry
BI317_02020 CDS
T04668
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
xga
Xanthomonas hortorum pv. gardneri
Pathway
xga03420
Nucleotide excision repair
xga03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BI317_02020
03430 Mismatch repair
BI317_02020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xga03400
]
BI317_02020
Enzymes [BR:
xga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BI317_02020
DNA repair and recombination proteins [BR:
xga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BI317_02020
MMR (mismatch excision repair)
Other MMR factors
BI317_02020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_12
InPase
Motif
Other DBs
NCBI-ProteinID:
APP83134
LinkDB
All DBs
Position
482489..484675
Genome browser
AA seq
728 aa
AA seq
DB search
MDVSHLLDHLNPAQREAVSAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAV
TFTNKAAGEMRHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQL
RLVKRVVQSLELDESKYPPKQMSWWINEQKDEGRRPQHIQPEPNDDWTEVRRQVYAAYQE
RCDRSGLLDFAELLLRAHELLRDTPALLAHYRARFREILVDEFQDTNAIQYAFVRVLAGE
TGHVFVVGDDDQAIYGWRGAKVENVQRFLKDFPGAQTVRLEQNYRSSANILGAANAVIAH
NPDRIGKQLWTDSGDGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAQ
SRALEEALISEQLPYRVYGGMRFFERAEIKDALAYLRLLSNRSDDAAFERAVNTPTRGIG
DRTLDEVRRLARANALSLWEAAMLCTQENTLAARARNALATFLSLVGQLHAETGDMELAE
RIDHVLMRSGLREHWAKESRSGLDSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFL
AYASLEAGEGQAQAGEEGVQLMTLHSAKGLEFPIVFLVGLEDGLFPSARSLEESGRLEEE
RRLAYVGITRARQKLVLCYAESRRIHGQDNYNVPSRFLREIPRELLHEVRPKVQVSRTAS
LGATRGGPVHGVVETAPIKLGANVEHPKFGGGVVVDYEGAGAHARVQVQFDEVGAKWLVM
AYANLTVV
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtggatgtctctcatttgctcgatcatttaaaccccgcccagcgcgaggccgtttccgcg
ccgccggggcattacctcgtgctggccggtgccggctccggcaagacgcgcgtgctgatc
catcgcatcgcctggctcaacgaagtccagggcgtgcccaaccacggcatcttcgcggtg
accttcaccaacaaggccgccggcgaaatgcgccaccgtaccgacctgcagctgcgtaac
ggcagccgcgggatgtggatcggcacctttcatgggctggcgcatcggctgctgcggctg
cattggcaggatgcgcggctgccggaaggcttccaggtcatggacagcgacgaccagctg
cggctggtcaagcgcgtggtgcagtcgctggagctggacgagagcaagtatccgcccaag
cagatgagctggtggatcaacgaacagaaggacgaaggccgccgtccgcagcacatccag
cccgagcccaacgacgactggaccgaggtgcgccggcaggtgtatgcggcctatcaggaa
cgctgcgaccgctccgggctgctggatttcgccgagttgctgctgcgcgcgcatgaactg
ctgcgcgacacaccggccttgctggcgcattaccgcgcgcgctttcgcgagattctggtc
gacgagttccaggataccaacgccatccagtacgccttcgtgcgcgtgctggccggcgaa
accggccacgtgttcgtggtgggtgacgacgaccaggccatctacggctggcgcggtgcc
aaggtcgagaacgtgcagcgctttttgaaggacttccccggcgcgcagacggtgcggctg
gagcagaactaccgctccagcgcgaatattctgggcgcggccaatgcggtgatcgcgcac
aacccggaccgcatcggcaagcagctgtggaccgattccggcgatggcgacccgatcgat
ctgtatgcggcctacaacgaagtcgacgaggcgcgctatgtggtcgagcgcgcgcggcag
tgggtgcgcgatggcggcagttacggcgaagtggcggtgctctatcgcagcaacgcgcaa
tcgcgcgcgctggaagaagcgctgatttccgagcagctgccgtaccgcgtgtatggcggc
atgcgcttcttcgaacgcgccgaaatcaaggatgcgttggcctacctgcgcctgctcagc
aaccgcagcgacgatgccgccttcgagcgcgcggtcaatacgcccacgcgcggtatcggc
gatcgcacgttggacgaagtgcgccgcctggcacgcgccaatgcgctgtcgctgtgggaa
gcggcgatgctgtgcacgcaggaaaacaccctggccgcccgcgcccgcaatgcgctggcc
acgttcctgagcctggtcggccagctgcatgccgaaactggcgacatggaactggccgaa
cgcatcgaccacgtgctgatgcgctctggtctacgcgagcattgggccaaggaaagccgc
agcgggctggattcggaatcgcgcaccgagaacctggacgaactggtttcggtagcctcg
cgcttcacccgcccggacgacgaagacagccagggcatgaccgaactggtcgccttcctt
gcctacgcgtcgctggaagccggcgaaggccaggcgcaggccggcgaagaaggcgtgcag
ctgatgacgctgcactcggccaagggcctggaattccccatcgtgtttctggtcggtctg
gaagatggcttgtttccgagtgcgcgctcgctggaagaaagcgggcggctggaagaagag
cgtcgcctggcgtacgtaggcatcacccgcgcgcgccagaagctggtgctgtgttacgcc
gaatcgcggcgcatccacggccaggacaattacaacgtgccctcgcgcttcctgcgtgaa
attccacgcgagttgctgcacgaagtgcgcccgaaagtgcaggtctcgcgcaccgcctcg
ctgggcgcgacgcgcggcgggccggtacacggcgtggtcgaaaccgcaccgatcaagctc
ggtgccaatgtcgagcaccccaagttcggcggcggcgtggtcgtggactatgaaggcgcc
ggtgcgcatgcgcgcgtgcaggtgcagttcgacgaagtcggcgccaagtggttggtgatg
gcgtatgcgaatttgacggtggtgtag
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