Xanthomonas hortorum pv. gardneri: BI317_03470
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Entry
BI317_03470 CDS
T04668
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xga
Xanthomonas hortorum pv. gardneri
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xga03032
]
BI317_03470
03400 DNA repair and recombination proteins [BR:
xga03400
]
BI317_03470
Enzymes [BR:
xga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BI317_03470
DNA replication proteins [BR:
xga03032
]
Prokaryotic type
DNA Topoisomerases
BI317_03470
DNA repair and recombination proteins [BR:
xga03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BI317_03470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
APP83370
LinkDB
All DBs
Position
complement(788904..791396)
Genome browser
AA seq
830 aa
AA seq
DB search
MPKHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLVPKEGAVDPDNGFAMRYDLIEKN
EKHVEAIARAAKTADDIFLATDPDREGEAISWHIAEILKERGLLKDKPMQRVVFTEITPR
AIKEAMLKPRAIAADLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV
EREEEIEAFIAREYWSIDAQCRHPSQPFNARLIKLDGQKFEQFTVTDGDTAEAARLRIQK
AAQGVLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGVALGDE
GSVGLISYMRTDSVNLSQDALAEIRDVIARDFGTASLPDQPNTYTTKSKNAQEAHEAIRP
TSALHTPAQVARFLSDDERRLYELIWKRAVACQMIPATLNTVSVDLSAGSEHVFRASGTT
VVVAGFLAVYEEGKDTKSSEDEDEGRKLPPMKAGDNIPLDRIVTDQHFTQPPPRFTEAAL
VKTLEEYGIGRPSTYASIIQTLQFRKYVEMEGRSFRPTDVGRAVSKFLSGHFTRYVDYDF
TAKLEDDLDAVSRGEAEWIPLMEKFWGPFKELVEDKKDSLDKTDAGSVRVLGADPVSGKE
VSARIGRFGPMVQIGTVEDEEKPTFASLRPGQSIFSISIEDALELFKMPRALGQDKDQDV
SVGIGRFGPFARRGSVYASLKKEDDPYTIDLERAVFLIEEKEEIARNRVIKEFDGSDIQV
LNGRFGPYISDGKLNGKIPKDREPASLSFEEVQQLLTDTGKPVRKGFGAKKATLKKNTVK
DSSPKKTAVKKTATKTATTKTAAKKAPAKKTAAKKAAKRVVKKVASKTAG
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcacctgctcatcgtcgaatcgcccgccaaggccaagacgatcaataaatac
ctcggcaaggacttcaccgtcctggcctcgtatgggcacgtgcgcgacctggtccccaag
gaaggcgcggtcgatccggacaacgggttcgcgatgcgttacgacctgatcgaaaagaac
gaaaagcatgtcgaagccattgcgcgtgcggccaagaccgccgacgacatctttctggcg
accgacccggaccgcgagggcgaggcgatcagctggcacatcgccgagatcctgaaagag
cgcggtctgctcaaggacaagccgatgcagcgggtggtgttcaccgagatcaccccgcgc
gcgatcaaggaagcgatgctcaagccgcgtgcgatcgccgccgacctggtcgatgcgcag
caggcacgtcgcgcgctcgactatctggtcggcttcaacctgtcgccggtgctgtggcgc
aaggtgcagcgcggcctgtcggccggccgcgtgcagtcgccggcgctgcgcatgatcgtc
gagcgcgaagaagagatcgaagccttcatcgcgcgcgaatactggtccatcgatgcgcaa
tgccggcatccgtcgcagccgttcaacgcgcgcctgatcaagctggacgggcagaaattc
gagcagttcaccgtcaccgacggcgataccgctgaagccgcgcgtctgcgcatccagaag
gccgcgcaaggcgtgctgcatgtcaccgacgtggccagcaaggagcgcaagcgccgcccc
gccccgccgttcaccacttccacgctgcagcaggaagcctcgcgcaagctcggtttcacc
acccgcaagaccatgcaggtggcgcagaagttgtacgaaggtgtggcgctcggcgacgag
ggctcggtcggtctgatcagctatatgcgtaccgactcggtgaatctgtcgcaggacgcg
ttggcggaaatccgcgacgtgatcgcgcgcgatttcggcaccgcgtcgttgccggatcag
cccaatacctacaccaccaaatccaagaatgcgcaggaagcgcatgaggcgatccgtccg
acctcggcattgcacacaccggcgcaggtcgcgcgctttctgtccgacgacgagcgccgt
ctgtacgaattgatctggaagcgcgcagtcgcctgccagatgattccggccacgctcaat
accgtcagcgtcgacctgtcggccggcagcgagcatgtgttccgcgccagcggcactacc
gtggtggttgcgggctttttggccgtgtacgaagaaggcaaggacaccaagagcagcgaa
gacgaggacgagggccgcaagctgccgccgatgaaggctggcgacaacattccgctggac
cgcatcgtcaccgatcagcatttcacccagccgccgccgcgcttcaccgaagcggcgctg
gtcaagacgctggaggaatacggcatcggccgtccgtccacctacgcctcgatcatccag
accctgcagttccgcaagtatgtggagatggaaggccgcagcttccgccctaccgacgtg
ggccgtgcggtgtccaagttcctgtccgggcatttcacccgctacgtggattacgacttc
accgccaagctcgaagacgatctggatgcggtctcgcgtggcgaagcggaatggattccg
ttgatggagaagttctggggcccgttcaaggaactggtcgaagacaaaaaggattcgctg
gacaagaccgacgccggcagcgtgcgcgtgcttggcgccgacccggtcagcggcaaggaa
gtcagcgcgcgcatcggccgcttcggcccgatggtgcagatcggcacggtcgaagacgaa
gaaaagcccacattcgcctcgttgcgcccgggccagagcatcttttcgatctccatcgaa
gacgcgctggaactgttcaagatgccgcgcgcgctgggccaggacaaggaccaggacgtc
agcgtcggcatcggccggttcgggccgtttgcgcgccgtggcagcgtgtatgcctcgctg
aagaaggaagacgacccgtacaccatcgatctggaacgcgcggtgttcctgatcgaagag
aaggaagagatcgcgcgcaatcgggtgatcaaggaattcgacggcagcgacatccaggtg
ctcaacggccgcttcggcccgtacatcagcgacggcaagctcaacggcaagatccccaag
gatcgcgaaccggcgtcgctgagcttcgaagaagtgcagcagttactgaccgacaccggc
aagccggtgcgcaagggcttcggtgcgaagaaggccacgctgaagaagaatacggtcaag
gattcgtcgccgaagaagaccgcagtcaagaagaccgccaccaagactgctacgaccaag
accgctgccaaaaaggctccggccaagaaaaccgccgccaagaaggccgccaagcgtgtg
gtcaagaaagtggcgagcaagacggcaggctga
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