Xanthomonas hortorum pv. gardneri: BI317_03570
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Entry
BI317_03570 CDS
T04668
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
xga
Xanthomonas hortorum pv. gardneri
Pathway
xga02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BI317_03570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xga03021
]
BI317_03570
Transcription machinery [BR:
xga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BI317_03570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
APP83390
LinkDB
All DBs
Position
810539..812416
Genome browser
AA seq
625 aa
AA seq
DB search
MANERPAQQSDIKLLISKGLEQGYLTYAEVNDHLPDDLVDPEQIEDIISMINGMGIDVHE
VAPDAETLLLNDGNTGNREVDDTAAEEAAAALTALDTEGGRTTDPVRMYMREMGTVELLT
REGEIAIAKRIEEGLSQVQAALGVFPLSTEMLLADYEAHKEGKKRLAEIVVGFNDLIEEA
DAAAAALAAAGPVAVSEDDAADDDDAEDGDDDAAEEEAGPTGPDPVEVATRMENLANEYA
KFKKIYAKNGAEHKLVVKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLH
LATAVARMPRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALRDVKDQIVSEQQGSIEMEK
ANYLTLGEIKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ
MLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVE
SPIDNTTNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQ
IEAKALRKLRHPSRSEQLRSFLDID
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcctgcccagcaatccgacatcaagctactgatcagcaagggcctg
gaacagggctatctgacctacgccgaagtcaatgaccatctgcccgacgacctggtcgac
ccggagcagatcgaagacatcatcagcatgatcaacggcatgggcatcgatgtccatgaa
gttgcgcccgatgctgaaaccctgttgctcaacgatggcaacaccggcaaccgcgaggtt
gacgataccgcagccgaagaagccgccgccgctctgaccgcgctcgacaccgaaggtggc
cgtaccaccgacccggtgcgcatgtacatgcgcgaaatgggcacggtcgagctgctgacc
cgcgaaggcgaaatcgccatcgccaagcgcatcgaagaaggcctgagccaggtccaggca
gcattgggcgtgttcccgctgtcgaccgagatgctgctggccgattacgaagcgcacaag
gaaggcaagaagcgtctggccgagatcgtggtcggtttcaacgacctgatcgaagaagcc
gacgccgctgccgcggcgctggccgccgctggcccggttgccgtttccgaagacgatgct
gcggacgatgacgacgccgaagacggcgacgacgacgctgccgaagaagaggccggcccg
accggtccggacccggtggaagtggccacgcgcatggagaacctggccaacgaatacgcc
aagttcaagaagatctatgccaagaacggcgccgagcacaagctggtggtcaaggcgcgc
gaagacatggccgccatcttcaccacgctcaagctgccgctgccgctgaccgacgcgctg
gtcacccagctgcgtggcgtggtcaacggcatcaaggaccacgagcgcaaggtgctgcac
ctggccaccgccgtggcacgcatgccgcgcaaggacttcatccgttcctgggaaggcaat
cagaccaacctggaatgggtggaagacgcgctcaagcgcaagcagaagtggtcctcggcg
ctgcgcgacgtcaaggaccagatcgtctccgagcagcagggctcgatcgagatggagaag
gccaactacctgaccctgggcgagatcaaggagatcagccgcgcgatggcctatggcgaa
gccaaggcacgcaaggccaagaaggaaatggtcgaggccaacctgcgtctggtcatctcg
attgccaagaagtacaccaaccgcggcctgcagttcctcgacctgatccaggaaggcaac
atcggcctgatgaaggcggtggacaagttcgagtaccgtcgcggttacaagttttcgacg
tatgcaacgtggtggatccgtcaggccatcacccgttcgatcgccgatcaggcgcgcacc
atccgtattccggtgcacatgatcgaaacgatcaacaagttgaaccgcatttcccgtcag
atgctccagcagttcggccgcgaggccacgccggaggaactggccaaggaaatggacatg
cccgaggacaagatccgcaaggtgatgaaaatcgccaaggagccgatctcgatggagacc
ccgatcggcgacgacgaggattcgcatctgggcgacttcatcgaggacaccaatgtggag
tccccgatcgacaacaccaccaacatcaatctctccgagacggtgcgtgatgtgttggcc
ggcctcaccccgcgcgaagccaaggtgctgcggatgcgcttcggtatcgacatgaatacc
gatcacacgctggaagaagtcggcaagcagttcgacgtcacccgcgagcggattcgtcag
atagaggccaaggcgttgcgcaaactgcgtcacccgagccgttcggagcagctgcgctcg
ttccttgatatcgactga
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