Xanthomonas hortorum pv. gardneri: BI317_04020
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Entry
BI317_04020 CDS
T04668
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xga
Xanthomonas hortorum pv. gardneri
Pathway
xga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BI317_04020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xga03019
]
BI317_04020
Enzymes [BR:
xga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BI317_04020
Messenger RNA biogenesis [BR:
xga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BI317_04020
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
P-loop_SecA
HEM4
Motif
Other DBs
NCBI-ProteinID:
APP83469
LinkDB
All DBs
Position
complement(901066..902454)
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AA seq
462 aa
AA seq
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MSFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
TLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDINELPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDAPRQAHA
HAGPKKPGGQRSSGPRQAGVAAGAGAGRRDGGRGGQRPSGTR
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctgggccttgcgcccttcctgctgcgcgcgttggccgagcagggc
tatgaaacccccaccgcgatccagcagcaggcgatcccgctggtgctggcaggtcacgac
ctgctggccggcgcacagaccggtaccggcaagaccgccgcgttcggcctgccgctgctg
cagcacctgggcaccacgccgcagccggtcaacggcccgcgcaagccgcgcgcgctgatc
ctgacccccacccgcgagctggccacccaggtgcatgacagcctgcgcggctacagcaag
tacctgcgtattcccagcgcggtgatctacggcggcgtgggcatgggcaaccagctcgac
accctgcgtcgtggcgtagatctgctgatcgcctgcccgggccggctgatcgaccatatc
gagcgtcgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgaccgc
atgctcgacatgggctttttgccgtcgatcaagcgcatcctgaccaagctgccgcgccag
gaccgtcagaccctgctgttctcggccacgttcgaagagaacatcaagcagctggcgctg
gaattcatgcgcaacccgatgcagatccaggtcaccccgagcaacaccgtggccgagagc
atcacccaccgcgtgcacccggtcgatggcgcccgcaagcgcgacctgctgctgcacctg
ctggcgcaggacagccgcgagcagaccctggtctttgcgcgcaccaagcacggcagcgac
aagctggcgctgttcctggaaaagtccggcatcaagaccgcggcgatccacggcaacaag
agccagggtcagcgtatgcgtgccctgagcgacttcaaggccggccgcgtgaccgtgctg
gtggccaccgatatcgccgcgcgcggcatcgacatcaacgagctgccgaaggtcatcaac
tacgacctgccaatggtggccgaggattacgtgcaccgcatcggccgtaccggccgtaac
ggctccaccggcgaggcgatctcgctggtggcgcaggacgaagccaagctgctgcgccag
atcgtgcgcatgctgggccgcgacgtggaaatccgcgacgtgccgggctacgagccgcag
accccgatccgttggggcaacagcgccccgggccgtgccgaacagccgggtggcgatcgc
gcgccgcgcaagagccacgcccgtcgtccgcatggcgatgcgccgcgtcaggcgcatgcg
catgccggcccgaagaagccgggtggccagcgcagcagcggtccgcgtcaggccggtgtt
gccgccggcgccggcgcaggccgtcgcgatggtggtcgtggtggccagcgtccgagcggc
acgcgctga
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