Xanthomonas hortorum pv. gardneri: BI317_04540
Help
Entry
BI317_04540 CDS
T04668
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
xga
Xanthomonas hortorum pv. gardneri
Pathway
xga00260
Glycine, serine and threonine metabolism
xga00460
Cyanoamino acid metabolism
xga00630
Glyoxylate and dicarboxylate metabolism
xga00670
One carbon pool by folate
xga00680
Methane metabolism
xga01100
Metabolic pathways
xga01110
Biosynthesis of secondary metabolites
xga01120
Microbial metabolism in diverse environments
xga01200
Carbon metabolism
xga01230
Biosynthesis of amino acids
xga01240
Biosynthesis of cofactors
xga04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
BI317_04540 (glyA)
09102 Energy metabolism
00680 Methane metabolism
BI317_04540 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
BI317_04540 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
BI317_04540 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
BI317_04540 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
BI317_04540 (glyA)
Enzymes [BR:
xga01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
BI317_04540 (glyA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Phage_capsid
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
APP83558
LinkDB
All DBs
Position
1023903..1025171
Genome browser
AA seq
422 aa
AA seq
DB search
MFSRDVRLETYDPELAKAIADEAGRQEDHVELIASENYCSPLVMEAQGSQLTNKYAEGYP
GKRYYGGCEFVDIAEQLAIERIKQVFGAGSTEDMYANVQPHSGSQANQAVYLALLQPGDT
ILGMSLAHGGHLTHGAKVNVSGKLFNAVQYGVNEQGLIDYDEVQRLATEHKPKMVVAGFS
AYSQKIDWARFRAIADSVGAYLFVDMAHVAGLVAAGVYPSPMEHAHVVTSTTHKTLRGPR
GGIIVAKGASEELQKKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPAFKAYQQQVVKNA
QAMANTLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNAVPNDPRS
PFVTSGLRLGTPAITTRGYLEQDSIDLANWIADVLDAPTDEAVLSKVRDAVTAQCKKYPV
YG
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgttctcgcgcgacgtccgactggaaacctacgaccccgaactggccaaggccatcgcc
gatgaagccggccgccaggaggatcacgtcgagctgatcgccagcgaaaactattgcagc
ccgctggtgatggaagcccagggcagccagctgaccaacaaatacgccgaaggctatccg
ggcaagcgctattacggtggctgcgagttcgtcgacatcgccgagcagctggcgatcgag
cgcatcaagcaggtgttcggagcgggctccacggaagatatgtatgcgaacgtgcagccg
catagcggctcgcaggccaaccaggcggtgtatctggcgctgctgcagcccggcgacacc
attctgggcatgagcctggcgcatggcggccacctgacccacggggcaaaggtcaatgtc
tccggcaagctgttcaacgccgtgcagtacggcgtcaacgagcagggcctgatcgactat
gacgaagtccagcgcctggccaccgaacacaagccgaagatggtcgtggcgggtttctcg
gcgtattcgcagaagatcgattgggcgcgcttccgcgccatcgccgacagtgtcggtgcg
tacctgttcgtggacatggcgcacgtggccggcctggtcgctgccggcgtgtatccgagc
ccgatggagcatgcgcacgtggtcacctcgaccacgcacaagacgctgcgcggcccgcgc
ggcggcatcatcgtggccaagggcgccagcgaagagctgcagaagaagctgcagtcgatc
gtgttcccgggcattcagggcggcccgctgatgcatgtcatcgcggccaaggcggtggcg
ttcaaggaagcgctggaacctgcgttcaaggcctaccagcagcaggtggtgaagaacgcc
caggccatggccaacacgctgattgcgcgcggctacaagatcgtctccggcggcaccgaa
aatcatctgatgctggtcgacatgatcggccgcgatgtgtccggcaaggacgcagaagcc
gcgctcggcaaggcccacatcaccgtcaacaagaacgccgtgcccaacgacccgcgttcg
ccgttcgtcacctccggcctgcgcctgggcaccccggccatcaccacccgcggctatctg
gagcaggacagtatcgatctggccaactggattgccgacgtgctcgacgctcccaccgac
gaagcggtgctgtcgaaggtgcgcgacgcggtgaccgcgcagtgcaagaagtatccggtg
tatggctaa
DBGET
integrated database retrieval system