Xanthomonas hortorum pv. gardneri: BI317_05625
Help
Entry
BI317_05625 CDS
T04668
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xga
Xanthomonas hortorum pv. gardneri
Pathway
xga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BI317_05625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xga03021
]
BI317_05625
03400 DNA repair and recombination proteins [BR:
xga03400
]
BI317_05625
Enzymes [BR:
xga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BI317_05625
Transcription machinery [BR:
xga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BI317_05625
DNA repair and recombination proteins [BR:
xga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BI317_05625
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
APP83742
LinkDB
All DBs
Position
1242848..1247065
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIELQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
VVELHAKVKVRITQVDVDAVDGKRTSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKK
NISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEA
EVLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSM
NSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGA
RKGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTTEGLIMTPIVEGGDVVEPLKERV
LGRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEEASVQSVKVRSTISCESSFGVCARC
YGRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSV
KFNNLKSVAHASGALVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQGVA
NWDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAHAKELRPIV
RIVDGKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGL
PRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVF
EGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQ
MLRKVEITDQGTSKFLNGEQVERQRVIEENVRLVKRNELPAKYDPVLLGITKASLATESF
ISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRRKSSGLTDSE
METLSGKPAVAEPVATVADAGADEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaatcaacagcgccagacgctggatttcgacgcgatc
aagatcgcgctggcctcgcctgacctgatccgttcgtggtcctacggtgaagtgaagaag
cccgaaaccatcaactaccgcaccttcaagcccgagcgtgacggcctgttctgcgctgcc
atcttcggcccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggcaccgaagtcacccttgccaaggtgcgtcgtgag
cgcatgggtcacatcgatctggcgtcgccggtcgcgcatatctggttcctcaagtcgctg
ccctcgcgcatcggtttgatgctggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtggtcaccgagccgggcctgaccccgctcgagcgccgccagctgctg
accgaagagcagtacctgaccgcacgccaggagtacaacgacgacttcgacgccgccatg
ggcgccgaggccgtgtacgaactgctgcgcacgatcgagctgcagtccgaaatgacccgt
ctgcgcgaagaaatcgccagcaccggttcggaaaccaagctcaagcgtctgaccaagcgc
atcaagctgatcgaagccttcctggaatcgggcaaccgtccggagtggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtgccgctggatggtggccgcttc
gcgacctcggatctgaacgatctgtaccgccgcgtgatcaaccgcaacaaccgtctgcgt
cgtctgctcgagctcaatgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgtcgcggccgtgccatcaccggcaccaac
aagcgtcctctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactactccggtcgttcggtcatcaccgtcggtccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgcggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaagtgatccgcgagcatccg
gtgctgttgaaccgcgcgccgaccctgcaccgtctgggcatccaggcgttcgagccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtgtgtaccgccttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgttgggcttgtactacatgagccgcgcgctggagaacaag
aagggcgagggcatggtgttcgccaacaccagcgaagtgaagcgcgcctacgacaaccgc
gtggtggaactgcacgccaaggtcaaggtccgtatcacccaggtggacgtcgatgccgtc
gatggcaagcgcaccagcggtacctcgatcgtggataccacggtcggtcgtgcgctgttg
agcgaaatcctgcccgaaggcctgccgttccagctggccaacaccgagatgaccaagaag
aacatctcgcgtctgatcaactccagctaccgtctgctgggcttgaaggacaccgtcgtg
ttcgccgacaagctgatgtacaccggctatgcttacgccacccgcgcaggcgtgtcgatc
ggcatcgacgacatgctgatcccggacgagaagaagggcatcctcaccgaggcagaagcc
gaagtgctggaaatccaggagcagtaccagtccggtctggtcaccgccggcgagcgttac
aacaaggtcgtggacatctggtcgcgcaccagcgagcgcatcgccaaggcgatgatggac
accatcggtaccgagaaggtcgaaaatgccaagggcgaaaccatcgaccagaagtcgatg
aactcgctgtacatcatggccgactccggtgcgcgtggtagccaggcgcagatccgtcag
ctggccggtatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgccgatc
aaggcgaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcc
cgtaagggtctggccgataccgcgctgaagaccgcgaactcgggttacctgacccgtcgt
ctggtcgacgtggcgcaggacgtggtcatcaccgaagtcgactgcggcaccaccgaaggg
ttgatcatgaccccgatcgtggaaggcggcgacgtggtggagccgttgaaggagcgcgtg
ctgggccgtgtggtggccgaggacgtctacctgccgggcaacgacgaggaaccgatcgtc
acccgcaacacgctgctcgacgaagcctgggtcgccaagttggaagaggccagcgtgcag
tcggtgaaggtacgttcgaccatcagctgcgagtcctcgttcggcgtgtgcgcacgttgc
tacggtcgcgaccttgcacgtggtcaccaggtcaacatcggcgaagcggtcggcgtcatt
gccgcacagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggt
ggtgcggcatcgcgtgcggctgcggtggacaacatcaccgtcaagaccaccggttcggtg
aagttcaacaacctcaagtcggtggcgcatgccagcggcgcgctggttgcggtctcgcgt
tcgggcgaactgtcggtgctcgatggccatggccgcgagcgcgagcgttacaagctgccg
tacggcgccaccatcaccgccaaagacggcgatgcggtcaaggccgggcagggcgtggcc
aactgggatccgcataaccacccgatcgtgtcggaagtggccggtttcatccgcttcatc
gacttcgtcgacggcgtcaccgtcatcgagaagaccgacgaactgaccggtctggcctcg
cgtgaaatcaccgacccgaagcgtcgcggtgcacatgccaaggaactgcgcccgatcgtg
cgcatcgtcgatggcaagggcaatgatctgacgatcccgaacacggatctgccggctcag
tacctgttgccgccgcgctccatcgtcaacctgcaggacggcgccgccgtcggcgtgggc
gacgtggtcgccaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctg
ccgcgcgttgccgatctgttcgaagcccgcaagccgaaggatccggcgatcctggccgag
cgttcgggcatcatcagcttcggcaaggacaccaagggcaagcagcgtctgatcatcaag
gacaccgatggttcggaacacgaagagctgatcccgaagtaccgccagatcatcgtgttc
gaaggcgagcacgtgaccaagggcgagaccgtggtggacggcgagccgagcccgcaggac
atcctgcgtctcctgggtgtcgagccgctggccgcgtatctggtcaaggaaatccaggac
gtgtatcgcctgcagggcgtgaagatcaacgataagcacatcgaggtgatcactcgccag
atgctgcgtaaggtcgagatcaccgatcagggcaccagcaaattcctcaacggcgagcag
gtcgagcgccagcgcgtcatcgaggaaaatgtccgcttggtcaagcgcaacgaattgccg
gccaagtacgatccggtgctgctgggtatcaccaaggcctcgctggccaccgagtcgttc
atctcggcggcttcgttccaggagaccacccgcgtgttgaccgaggctgccgtgcgcggt
acccgcgacaacctgcgcggtctgaaggaaaacgtgatcgtgggtcgtctgatcccggcc
ggtaccggtctggcctaccatgccggacgccgcaagtcttcgggtctgaccgactcggaa
atggaaacgctgtcgggcaagccggcagtggccgaaccggtcgccacggtggccgacgct
ggcgcggacgaggagtaa
DBGET
integrated database retrieval system
