Xanthomonas hortorum pv. gardneri: BI317_05775
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Entry
BI317_05775 CDS
T04668
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
xga
Xanthomonas hortorum pv. gardneri
Pathway
xga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BI317_05775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xga03021
]
BI317_05775
03400 DNA repair and recombination proteins [BR:
xga03400
]
BI317_05775
Enzymes [BR:
xga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BI317_05775
Transcription machinery [BR:
xga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BI317_05775
DNA repair and recombination proteins [BR:
xga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BI317_05775
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
APP83771
LinkDB
All DBs
Position
1264782..1265780
Genome browser
AA seq
332 aa
AA seq
DB search
MTVTANQVLRPRGPQIERLTDNRAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVE
IDGVLHEYTTVEGLQEDVLDVLLNLKDVAIRMHSGDSATLSLSKQGPGTVTAADIRTDHN
VEIINGDHVICHLTKDTALNMRLKIERGFGYQPAAARRRPDEETRTIGRLMLDASFSPVR
RVAYAVEAARVEQRTDLDKLVIDIETNGTIDAEEAVRTAADILSDQLSVFGDFTHRDRGA
AKPAASGVDPVLLRPIDDLELTVRSANCLKAESIYYIGDLIQKTEVELLKTPNLGKKSLT
EIKEVLAQRGLALGMKLENWPPAGVAQHGMLG
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgacggttaccgccaaccaggttctgcgcccccgtggtccgcagatcgaacgtcttacc
gacaatcgcgcaaaggtcgtgatcgagcccttggagcgcggttacgggcacacgctgggc
aatgccctgcgtcgtgtgctgttgtcgtcgatcccgggttttgcgatcaccgaggtcgag
atcgatggcgtgctgcacgagtacaccacggtcgaagggctgcaggaagacgtgcttgac
gtcctgctcaacctgaaagacgtggcaattcgtatgcacagtggcgatagcgccacgctg
tcgctgtccaagcagggtccgggtacggtcactgcggccgacatcaggaccgatcacaac
gtcgagatcatcaacggcgaccacgtgatctgccacctgaccaaggacacggcgctgaac
atgcgcctgaagatcgagcgtggtttcggctatcagccggctgccgcgcgtcgtcgtccg
gacgaagagacccgcaccatcggtcgtctgatgctggatgcatcgttctcgccggtgcgt
cgcgttgcctatgccgtggaagctgcgcgtgtggaacagcgcaccgacctcgacaagttg
gtgatcgacatcgaaaccaacggcacgatcgatgccgaggaagccgtgcgcaccgccgcc
gacatcctcagcgatcagctgtcggtgttcggtgatttcacccaccgcgatcgcggtgcg
gccaagccggctgccagcggcgtggatccggtgctgctgcgcccgatcgacgacctcgag
ctgaccgtgcgttcggccaactgcctgaaggccgaaagcatctactacatcggcgatctg
atccagaagaccgaagtggagctgctcaagaccccgaatctgggcaagaagtcgctcacc
gaaatcaaggaagtgctggcacagcgcggccttgcactgggcatgaagctggagaactgg
ccgccggccggtgtcgctcagcacggcatgcttggttaa
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