Xanthomonas hortorum pv. gardneri: BI317_09240
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Entry
BI317_09240 CDS
T04668
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xga
Xanthomonas hortorum pv. gardneri
Pathway
xga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BI317_09240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xga03019
]
BI317_09240
03016 Transfer RNA biogenesis [BR:
xga03016
]
BI317_09240
Enzymes [BR:
xga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BI317_09240
Messenger RNA biogenesis [BR:
xga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BI317_09240
Transfer RNA biogenesis [BR:
xga03016
]
Prokaryotic type
tRNA degradation factors
BI317_09240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
DUF7680
KH_PNO1_2nd
S1_2
Motif
Other DBs
NCBI-ProteinID:
APP84335
LinkDB
All DBs
Position
2012807..2014921
Genome browser
AA seq
704 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PDIDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTISELKDSQLELVVAG
TANAVLMVESEAALLSEEVMLGAVTFGHRELQKVINVINELTVEAGTKPSTWVAPAKNTA
LINALKEAVGAQLSGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSSAELSKEFGE
LEYHTMRDSVLETKVRIDGRALDTVRPISVQAGILPRTHGSALFTRGETQAIVVTTLGTA
RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLE
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLS
DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLYILGEMSK
ALTTPRLELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS
VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVPASAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcaccctggagacgggc
gaaatcgctcgccaggcaggcggcgccgtcatcgtcaagttcgacgacaccgtactgctg
gtcaccgccgtcgccgcgaagagtgcgcgcgaagggcaggacttcttccccctgacggtt
gattatcaggagaagttctatgccggcggccgcatcccgggcggcttcttcaagcgcgaa
ggacgtgcgaccgagaaggaaacgctgatctcgcgcctgatcgaccgtccgatccgtccg
ctgttcccggaggactacaagaacgaagtacagatcatcgccacggtgatgtcgatgaac
ccggacatcgacggcgatatcgccgcgctgatcggcgcatcggccgcactgtcgctggcc
ggtacccccttcaacggcccgatcggcgccgccaaggtgggctacaagaacggtgagtac
atcctcaacccgaccatctccgagctgaaggattcgcagctggagctggtggttgccggt
accgccaatgcggtgctgatggtggagtcggaagcggcgctgctgtccgaagaagtgatg
ctgggcgcggtcaccttcggccatcgcgagttgcagaaggtcatcaacgtcatcaacgag
ctgaccgtcgaagccggcaccaagcccagcacctgggttgcgcctgccaagaacaccgcg
ctgatcaatgcactgaaggaagcggtcggcgcgcagctgtccggtgccttccaggtgcgc
gacaagctgcagcgtcgcgacgcgatctccgcgatcaagaaggacgtgctcgagtcgctg
gcgggccgggttgcttcggaaggttggagcagtgccgagctgtcgaaggaattcggcgag
ctggaataccacaccatgcgcgactcggtcctggagaccaaggtgcgtatcgacggccgt
gcactggataccgtgcgtccgatctcggtgcaggccggcatcctgccgcgtacgcatggc
tcggcgctgttcacccgcggcgagacgcaggcgatcgtggtcaccacgctgggcaccgcc
cgcgacggccaggtgatcgatgcggtcagcggcgagtacaaggaaaacttcctgttccat
tacaacttccctccgtactcggtgggcgagtgtggtcgtttcggtgcgcccaagcgtcgc
gaaatcggtcacggccgtctggccaagcgcggcgtgctcgcggtgatgccgagcctggaa
gaattcccgtacaccatccgcgtcgtctcggaaatcaccgagtccaacggctcttcgtcg
atggcttcggtgtgcggcagctcgctggcgctgatggatgccggcgtgccggtcaaggca
ccggtggcgggtatcgccatgggcctggtgaaggaagacgaccgcttcgtggtgctgtcc
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtggccggtactgcc
gaaggcgtgtccgcgctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggcattgcagcaggccaaggctggccgtctgtatatcctgggcgagatgtccaag
gcgctgaccaccccgcgtctggagctgagcgactacgcgccgcgtctgctgaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggtggctcgaccatccaggcgatc
accaaggaaaccggtacgcagatcgacatccaggacgatggcacgatcatcatcgcctcg
gtgaatgcgattgccgcgcaagctgcgaagtcgcgcatcgagcagatcacctcggacgtg
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtc
accatcctgccgggcaaggacggcctggtgcacgtctcgcagatttccagcgagcgcgtg
gagaaggtcggcgacaagctgaaggaaggcgatctggttcgcgtcaaggtgctggaagtg
gacaagcagggccgcatccgtttgtcgatcaaggcagtggaagaaggcgagggcgtgccg
gcttcggccgagtaa
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