Xanthomonas hortorum pv. gardneri: BI317_12970
Help
Entry
BI317_12970 CDS
T04668
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
xga
Xanthomonas hortorum pv. gardneri
Pathway
xga02020
Two-component system
xga02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BI317_12970
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BI317_12970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xga03021
]
BI317_12970
Transcription machinery [BR:
xga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BI317_12970
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_3
HTH_31
HTH_23
Sigma70_r4
HTH_38
HTH_Crp_2
DUF6990
Phage_CII
DUF5429
Motif
Other DBs
NCBI-ProteinID:
APP84938
LinkDB
All DBs
Position
2776333..2777736
Genome browser
AA seq
467 aa
AA seq
DB search
MKTTISAQLGQQLHLTPQLLQSIRLLQLDGMQLELEIRRALETNPLLELEELADSSDDAA
TSDDGVSDIAAFDELPESTMWDVQSSNWNDGDDDRMQRVAAGESTDPHVRILRELALDLD
EAALAAAAFWLEQTDDAGYLSEALATLQQLGATRLGMTVQAVEAIRQRLLHGDPAGLAAC
DLRECLQAQLSALPGRVPARHLAARILSGDLELLASHDYALLARAHDAELDDAREAVRLI
LSLQPRPGDDLLQESNASVIPDVLAWHADGSWRVALNPATTHRVSINPVHERALAEAGEA
AQPLRDMLQEARWLTRGLSMRYETLLRATRAIVERQAAFLVRGEEAMAPLTLKEIADEIG
MHESTISRITTGKYIQTPRGTFELKHFFAVRLEGASVSGQAVKAMVRRLIESEPAGRPLA
DEAIAGLLSRQGVNIARRTVAKYREQLDIAPARERRRINKPLLARAG
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgaccatttccgcccagcttggccagcaactgcacctgaccccgcagttgctg
cagtcgatccgtctgttgcaattggacggcatgcagctggagctggaaatccgtcgcgcg
ctggaaaccaatccgctgctggagctggaagaactggccgacagcagcgacgacgccgcg
accagcgatgatggcgtctcagatatcgccgccttcgacgagctccccgagagcacgatg
tgggatgtgcaaagcagcaactggaacgatggcgacgacgaccgcatgcagcgcgttgcc
gctggcgaatccaccgacccgcatgtgcgcatcctgcgcgaactggcgctggacctggac
gaggccgcattggcggccgccgcgttctggttggagcagaccgacgacgccggctatctg
agcgaagcgttggcgaccctgcagcagctcggcgccactcgcttgggtatgaccgtgcag
gcagtggaagcgatccgtcagcgcctgctgcacggcgacccggccggcctggccgcctgc
gatctgcgcgagtgtctgcaagcccagctgagcgccctgcccggccgcgtgccggcacgc
catctagctgcgcgcattctgtccggcgatctggaattgctggccagccacgactacgcg
ttgctggcacgcgcacacgacgccgagctcgacgatgcgcgcgaagcagttcgcctgatc
ctctcgctgcaaccgcgtccaggcgacgacctgctgcaggagagcaacgccagcgtgatt
ccggatgtgctcgcatggcatgccgatggcagctggcgcgtggcattgaatccagccacc
acgcatcgcgtgagcatcaatcccgtgcacgaacgcgcactggccgaggccggcgaagcc
gcccagccgctgcgcgacatgctgcaagaagcgcgctggctgacccgtggcctgtcgatg
cgctacgagaccttgctgcgtgccacgcgcgccatcgtcgagcgtcaggctgcgtttctg
gtgcgtggcgaagaagccatggcaccgctgacgctgaaggaaatcgccgatgagatcggc
atgcacgagtcgacgatttcgcgcattaccaccggtaaatacatccagaccccgcgcggc
accttcgagctcaagcatttctttgccgtgcgtctggaaggcgccagcgtctccggccag
gcagtcaaggcgatggtgcgcagactgatcgaaagcgaaccggccggccggccgctggcc
gacgaagccatcgccgggctgttgtcgcgtcagggcgttaacattgcccgtcgcactgtg
gccaagtaccgcgaacaactcgacatcgccccggcacgcgagcgccgccgcatcaacaaa
ccgctgcttgcccgggcaggataa
DBGET
integrated database retrieval system
