Xanthomonas hortorum pv. gardneri: BI317_13745
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Entry
BI317_13745 CDS
T04668
Name
(GenBank) type IV secretion protein Rhs
Organism
xga
Xanthomonas hortorum pv. gardneri
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
Motif
Other DBs
NCBI-ProteinID:
APP85069
LinkDB
All DBs
Position
complement(2972023..2976561)
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AA seq
1512 aa
AA seq
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MPSEGIKAFRLFVLMLIGLLSVTSVDVSAASYYGAPYYVNSIYGNRSFGSASAGAEWLVG
QMTKGCMSKPQGCSSWPVVKYSATTTGAFVMWPNDPTGLGYFVEATKYAVGSPKKNLGSC
SMPCSGGLGAGRDGTGPRGSRDSAAVANKPGSVFEGDPINTATGNFYRQDTDYDNPSGLV
FRRFYNSSLSVSSTSMGQQWRHFFDRSLEIQRSTSAVTDTQAINAYRPDGSSVTFQLTNG
VWKASADYSETLVERPDGAGFALAISATQQTEIYDAKGLLQEVYDKAGQRVYLLTYSLPD
ATGVGGGILLSVADRSGRQMLFDYDSASKLAGVTLPDKGRIFYSYDANGYLASVKYPDGK
SIGYLYNESSFTAGNKLPGVLTGVIDEKGVRYETITYQSSRKATSASFAGGVDTTKIDYD
AYSTNGIVNSSVIGPLGVRSYLKFVDAATGAIRFASSGLPCGTQCNQPYKTITYDANGYI
ASTMDFQGNKTQTSFDTNGLLQQQVDAVGSAQQRTINTVWDTAIREPLERTVLDASNAVK
AKSKWAYNVSGLQTASCEINTAVTTGISYVCGSAANAPAGVRQWRTSYCEKVDAVNCPQV
GLVLSVDGPLTDVSDVKAYRYFSSSDESGCGTVGGQCQRVGDLFQITDALGQVTTYASYD
SNGRPARVLDSNGVTTDFGYSPRGWLTSKITRSDASGGASARDRVTIIKYDETGNVSQVI
GPDGDVVTYDYDAAHRLTDITDGAGNNLHYSLDVAGNRLKEDFKDPSGNVKKTLTRIYNK
LGQLQTQADASANPTDFSYDLNGDLKLMTDALGRKTQLDPDPLRRVAHTLQDVGGLAVET
TQQMDALDRVTAFIDPKGLTTRYDYNSLGDLSKLISPDTGATTYSYDAAGNRTLEATARG
VKISSSYDALGRLTKLSYPTSTFNVIYSYDSVPASCQAGETFATGRLASIKDSSGATEYC
YNSFGDLVRKLQTTNGKAFTLRYGYTASGRLASVIYPDGAKVDYVRNGLGQATEVGYTPA
TGARQILLKNASYLPLGPIAGWTYGNGRVLTRAYDQDYRPKAIQDTSAGGLDVGFGFDPV
GNLSKLTPAGGTVADVTLGYDPLGRLTEFKDGVTGTVLDGYTYDKTGNRQSSKSAAGEVA
YTYEANSHRLIKVGGAPRVYNAVGDTTSINGTEREFVYDVTGRMSQVKRNGVVVREYRYN
GTGEQVRRFLGTANTYTLYDESGRWMGDYDNAGKPLQQAIWLDDMPVGVTGIDAKLAYIE
PDHLGSPRVVVDPARNVAMWAWNLKGEAFGNTAPNQDPDQDGAGFVLDMRFPGQRYDAMS
GLNQNYFRDFDVAAGRYIQSDPIGLNGGVSTYSYVEGDPLFSKDPLGLEKWVWISPIRDP
VIYSGARADEDRPGILTIYAHGGPNAVNGPSFFNKYGLAFSADQVADIIEDSSWNRKDVV
WLKSCNTGKDPNGFAQQLANRLGVTVYAPNAQVWFNKQGVIGPMPRVGGVGRADYSNPGQ
YTPFRPMPQIGK
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgccatcggaaggtattaaggcttttcgcctgttcgttctaatgctaataggtttgtta
tcggtaacgtcagttgacgtgagtgctgcgtcttactacggcgcgccgtattacgttaat
tcgatctatggaaatcgttcatttggttcagcgagcgcgggcgccgagtggctggttggg
caaatgaccaaaggttgcatgtcgaaacctcagggttgttcgtcttggccagttgtcaaa
tatagcgcaaccacaacgggcgcgtttgtgatgtggcccaatgacccaaccggactgggc
tatttcgtggaagcgacaaagtatgcagtcggctcgccaaagaaaaatcttggcagctgc
agcatgccctgtagcggcggtcttggcgctggcagggacggaactggcccacgcggtagc
cgtgatagtgctgccgtcgcgaacaaacctggatcagtttttgaaggcgatccaatcaat
accgcgacagggaatttttatcgtcaagatacagactacgataacccgagtggtcttgtg
tttcgtcgattttacaacagctcgttgtcggtttcctcgacctcaatggggcagcagtgg
cgccatttctttgatcggagtctggagattcagcgctctacgagcgcggtaactgacact
caagcgatcaatgcttatcgtccagatggaagctcggtgacgttccagctgactaacgga
gtatggaaggctagtgctgattactcagagacgcttgtcgaacggcccgacggagcaggc
ttcgcattggcgatttcagcgacgcagcagacagagatttatgacgcaaagggtctcttg
caggaggtctacgataaggcaggtcagagggtgtatttactgacctacagcctccctgat
gctacaggtgtgggcggcggaattcttttgagtgtggccgatagaagcggccggcaaatg
ctctttgattacgatagtgcgtcaaaattggctggagtaacgctacctgataaaggcagg
atattttactcatatgacgcaaatggataccttgcttcggtgaaataccccgatggaaaa
tcgatcggctatctttacaatgagagcagctttacggcagggaataagcttcctggtgtg
ctgaccggcgtaattgatgaaaaaggtgttaggtatgaaacgatcacatatcaatcatcg
agaaaagcaacctctgcatcatttgctggtggagttgacactacgaaaattgattacgac
gcatattccactaatggaatagtcaattcttctgtgattggccccttaggtgtgcgtagt
tacttgaagtttgttgatgctgcgaccggcgcaatccgttttgcaagctctggtttgcct
tgcggcacgcaatgcaaccaaccgtacaagaccattacatacgatgcgaatggttacata
gcgtctacgatggattttcagggtaacaaaacgcagaccagcttcgataccaatggtttg
cttcagcagcaggttgatgcggtaggctctgcgcaacagagaactataaatactgtctgg
gacacggctatacgtgaaccgcttgaacgaactgttcttgacgctagtaatgcagtcaag
gcgaaatcgaaatgggcttacaacgttagcggtttgcagaccgccagttgcgagatcaac
accgctgtgacgacaggtatttcctacgtgtgtggaagcgcggcaaatgcacctgctggc
gtccgtcagtggcgcacaagctactgtgaaaaagtcgacgcagtcaattgtccgcaggtc
ggcttggttctctcggtagacgggcctcttacagatgtgagcgatgtcaaggcataccgc
tacttcagctctagtgatgaatctggatgtggcacggtaggcgggcaatgccagcgggtt
ggtgacctctttcaaatcacagatgcgttaggacaggtcaccacttatgcgtcatatgac
agcaatgggaggccggcacgggttctcgattcaaacggggtcacgactgactttggctac
tcgcctcgcggatggctgacgtccaagatcaccaggtccgatgccagtggcggtgcttct
gcccgggatcgtgtaacgataatcaagtacgacgagacaggcaacgtcagtcaggttatc
gggcctgatggcgacgtagtgacgtatgactatgatgcggcgcaccgtttgacagacata
actgacggtgctggtaataatttgcattattcgctggatgttgcaggaaatcggctgaag
gaagatttcaaagatccatccggcaatgtcaagaaaactctaactcgcatttacaacaag
ctaggacaattgcagacacaggcggatgcgtctgctaatccgactgatttttcgtatgat
ctcaacggtgatctaaagttgatgaccgatgcactgggtcgcaagacacagttggatccc
gatcctttgcgccgtgtcgcacatacgcttcaggatgtaggcgggctggcggtggagaca
acgcaacaaatggatgcgctggaccgcgtgaccgctttcatcgaccctaagggcctgact
actcgttacgattacaacagcctcggcgacctcagcaagctgattagtccggatactggc
gcaacgacctacagctatgatgccgccggtaaccgtacactcgaagcgactgcccgcggg
gtcaaaatcagttcaagctacgacgcgttgggacgattgaccaagctgagctatccgacc
agcaccttcaatgtcatttatagctacgactctgtaccggccagctgccaggcaggagag
acatttgcgactggccgcttggcgtccatcaaggatagcagcggggcgaccgagtattgc
tacaacagtttcggcgatctggtgcgcaagctgcagaccaccaacggcaaggctttcacg
ctgcgctatggctacaccgcgtcgggtcgtctggcgagcgttatctacccggacggcgcc
aaggtggattacgtccgcaacgggctgggtcaagccaccgaagtgggctatacccccgca
acgggcgctcgccaaattctcttgaaaaacgccagctatcttccgcttggtccaatcgca
ggctggacgtacggtaacggtcgtgtactgacgcgtgcctatgatcaggactatcgcccg
aaagcaattcaggacacgagcgccggaggtctggatgtcggttttggtttcgacccggtc
ggcaatctgtccaagctgaccccggccggcggcactgttgcggatgtcacgctgggctat
gacccgcttggccggttgacggagttcaaggacggcgtgaccggcacggtactggatggc
tacacctacgataagacaggtaaccgtcagagcagtaaatcggcagccggcgaagtcgct
tacacctacgaggcaaacagccatcgcctaatcaaggtaggtggggcaccacgtgtctac
aacgccgtaggcgataccacctcgatcaacggaaccgagcgcgaattcgtttacgacgtg
accggccgtatgagccaagtcaagcgcaatggcgtagtggtacgcgagtaccgttacaac
ggcacgggcgagcaggtccgtcgcttcctcggtactgcaaatacttacacgctctatgat
gagtccggccgctggatgggtgattacgacaatgccggcaagccactgcagcaagcgatc
tggctggatgacatgccggtgggagtcaccggtatagatgccaagctggcctatatcgag
cctgatcacttgggcagcccgcgtgtggtggttgatccagcgcgtaatgtggccatgtgg
gcctggaacttgaagggagaggcgtttgggaatacggcgccgaatcaagatcctgatcaa
gatggtgcaggtttcgtgttggatatgcggtttccagggcagcgctacgatgcaatgagt
gggctaaatcagaactattttcgagactttgatgttgccgccgggcgatatattcagagc
gatccgattgggttaaatggcggagtttctacatattcctacgtcgaaggcgatcccctc
ttttctaaagatccacttggcctggaaaagtgggtttggatttcccctattcgagatccg
gttatttattcgggagctagggctgatgaagacaggcctggcatcttgacaatttatgcg
catggaggtccgaatgcagtgaacggtccatccttctttaataagtatggccttgcattc
agtgctgatcaggttgcagatattattgaggatagttcttggaaccgtaaggatgttgtt
tggttgaaatcttgcaacacgggtaaagatcccaatgggtttgctcaacaattagctaat
cggcttggcgtgaccgtttatgcaccaaacgctcaagtttggtttaataagcaaggagtt
attggtccgatgccaagggtaggtggagtaggaagagctgattattcaaaccctgggcaa
tacactccatttcgcccaatgcctcaaatcgggaaataa
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