Xanthomonas hortorum pv. gardneri: BI317_19720
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Entry
BI317_19720 CDS
T04668
Name
(GenBank) rhamnogalacturonase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
xga
Xanthomonas hortorum pv. gardneri
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
BI317_19720
Enzymes [BR:
xga01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
BI317_19720
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GFIT
Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
PapC_N
Glyco_hydro2_C5
Motif
Other DBs
NCBI-ProteinID:
APP86052
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Position
4325559..4327166
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AA seq
535 aa
AA seq
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MPRPTLRILACALLFYGSVNAPAMAAFGVTRSGDRFIVDTGAQLVFSVNAGNGDIVSMRY
RDNELQTTESKGTQLASGLGSASVEARTVGGAIVVSARAGDLTQYYIARTGRNAIYMATY
APALSKVGGEELRFVTRLNVAKLPNAQQEPDSNVGTPVESEDVFLLPDGRTSSKFYSARR
MIDDKVHGVSGSGVAAFMLMGNRERSSGGPFFKDIATQKTRVTHELYNYMYSDHTQTEAF
RGGFHGVYGLLFTDGGAPSSAQLDTSFVDASLGLSGYLADAGRGAVSGRVSGVLSGQPAV
IGLRSDQAQYWATANGSGDYQLAGVRPGRYRMTLYQNELEVAQRDVEVFANATAQAALQA
VALAGTPKWQIGVADGTPAGFRYADLLPRAHPSDKRMSWVPVTYTVGSSSVSSFPAVQWR
SINTPNRIDFTLAANEVRGYRLRIFVPLSQVSARPQISVNARWNGPLPATPNQPKTRAIT
RGTTRGNNTLYEVDIPASALQAGSNRIEIGVASGSPDDGFLSPAFVFDSIQLVAM
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgccccgccctaccctgcgcatcctggcatgcgcactgttgttctacggcagcgtcaac
gcacctgccatggcggccttcggcgtgacccgcagcggtgatcgcttcatcgtggacacc
ggcgcccaactggtgttttcggtcaacgccggcaatggcgatatcgtgtcgatgcgttat
cgcgacaacgagttgcagaccaccgagtccaagggaacgcagctggcctcggggctgggt
agcgccagcgtggaggcgcgcacggtgggtggggcgatcgtggtctcggccagggccggc
gacctgacccagtactacattgcacgcacaggccgcaacgcgatctacatggcaacctat
gcaccggcactgtcgaaggtcggcggcgaagagctgcgcttcgtcacccgcttgaatgtc
gccaagctgccgaatgcacagcaggaacccgattccaacgtgggcacgccggtcgagagc
gaggatgtgttcttgctgccggatggacgcaccagttccaagttctactcggcacgccgc
atgatcgacgacaaggtgcatggggtcagcggttcgggggttgcggcgttcatgctgatg
ggcaatcgcgagcgcagttccggcgggccgtttttcaaggacatcgccacgcaaaaaacc
cgcgtgacgcatgaactctacaactacatgtattccgaccatacccagaccgaggcgttt
cgcggcggtttccacggcgtgtacgggctgctgttcaccgatggcggtgcgccctccagc
gcgcaactggacaccagctttgtcgacgccagcctgggcctgagcggttatctcgccgat
gccgggcgcggtgcggtgagcggccgcgtcagcggcgtgttgtccggccaacccgccgtg
attggcctgcgcagcgaccaggcgcagtactgggccacggccaatggcagcggcgactac
cagcttgccggtgtgcgcccgggacgctatcgcatgacgctctaccagaacgaactggaa
gtggcccaacgcgatgtcgaagtgtttgccaatgcgacggcgcaagccgcgctacaggca
gtggcattggcgggcacgccgaagtggcagatcggcgttgccgatggcacgcccgccggt
ttccggtatgcagacctgttgccgcgcgcgcatccctccgacaaacgcatgagctgggta
ccggtcacctacaccgttggctccagcagtgtgagcagctttccggcggtgcagtggcgc
agcatcaacacgccgaaccgcatcgacttcaccttggcggccaatgaagtgcgtggctac
cgcctgcgtatcttcgtaccactgagccaggtcagcgcgcgtccgcagatcagcgtcaat
gcgcgctggaatggaccgctaccggccacacccaaccaacccaagacgcgcgccatcacc
cgtggcaccacgcgcggcaacaacacgttgtacgaggtggatattcctgcctcggcgctg
caggccggcagcaaccgcatcgagatcggcgtcgcctccggatcgccggacgatggcttc
ctcagcccggcgttcgtgttcgacagcatccagctggtggcgatgtaa
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