Xanthomonas hortorum pv. gardneri: BI317_20200
Help
Entry
BI317_20200 CDS
T04668
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
xga
Xanthomonas hortorum pv. gardneri
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xga03000
]
BI317_20200
Transcription factors [BR:
xga03000
]
Prokaryotic type
Helix-turn-helix
Other families
BI317_20200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
HTH_8
Sigma54_activ_2
PAS_4
HTH_30
PAS
HTH_23
AAA_5
PAS_9
HTH_7
AAA_2
MCM
HTH_22
HTH_AraC
PAS_8
HTH_20
HTH_17
HTH_50
HTH_28
TsaE
Mga
Motif
Other DBs
NCBI-ProteinID:
APP86127
LinkDB
All DBs
Position
4441954..4443927
Genome browser
AA seq
657 aa
AA seq
DB search
MSEPSVVAATSIALPEIEPDVLRQIRRLRDIAPLAAPLSRSWRRCLDEHSLLPEAPPEAL
VHDALHVRERQQRLGEVLRIAKVEMENLYEQIAGSGYAVIFADAEATVLHSVHDPTLLRE
FRQAGLFCGASWAECHQGTNGLGTCAVERTAVSVHRGEHYLTRHLPLSCCGAPILDPHGG
LLAVLDASTPDAQDGKQIQRHTVALVSMSAAQISRSHFLNQFGHAFILRFHSRPEFAGLL
HEALIAIDTDGRVLAVNEAVLEQLGKIDRSQLVGRNISQVMQLDFDTLEHRAGSDAGTLW
SIRCACHGRRFYALVRPPRARPALPAVGGPAQLAPDTELQPGEHVGSDPRMRHNLANALK
LAAHRVSILLRGDTGTGKEEFAKAVHRGSPWANGAFVAINCAAIPEALIESELFGYARGA
FTDAAREGRHGKLLQASGGTLFLDEIGDMPLPLQSRLLRVLEEQSVTPLGSERAVPLELH
VISASHRDLAQRVAAGEFREDLYYRLNGVVLHLPPLRERSDKAELIRTLLREENSEHSVR
ISEEAMHKLLSYAWPGNLRQLRNVLRTAAVLCSDGVIRLPNLPQEIVDAGSAPCLVDGRA
VAADDMPGRVALDQAERLVLQQQLERHRWNVSRTADALGISRNTLYRKLRKHGLDTG
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagccaagcgttgtcgccgctacgtccatcgccctgcctgagatcgaaccggat
gtgctccggcagatccgccggctgcgcgacatcgccccgttggccgcgccactgtcgcgc
tcgtggcgacgctgcctagacgagcattcgctgttgcccgaggcaccacccgaagcgctg
gtgcacgacgccttgcacgtgcgcgagcgccagcagcgtctgggcgaggtgctgcgcatc
gccaaggtggaaatggaaaacctctacgagcagatcgccggcagcggttatgcggtgatc
tttgccgatgccgaagcgaccgtgctgcacagcgtgcacgacccgaccctgctgcgcgaa
tttcgccaggccggcctgttctgcggcgccagttgggccgaatgtcatcagggcaccaac
gggctgggcacctgcgcggtggagcgcacggcggtgagcgtgcaccgtggcgaacactat
ctgacccgccatctgccgttgtcatgctgcggcgcgccgatcctggacccgcacggcggt
ctgctggcggtgctggatgcctccacgcccgatgcgcaggacggcaagcagatccagcgc
cacaccgtggccctggtgagcatgtcggcggcgcagatctcgcgctcgcattttctcaac
cagtttggccatgccttcatcctgcgcttccatagccggcccgagtttgccgggttgctg
catgaggcgctgatcgcgatcgatacggacggccgtgtattggcagtcaacgaggcggtg
ctggagcagctcggcaagatcgatcgcagccagctggtgggccgcaacatctcgcaggtg
atgcagctggacttcgacaccctcgagcatcgtgcgggcagcgatgcaggcaccttgtgg
tcgatccgctgcgcctgccatgggcggcgtttctacgcactggtgcgcccgccgcgtgca
cgtccggcgctgccggcggtaggcgggccggcacagctggcaccggataccgagctgcaa
cccggtgagcatgtgggctcggatccgcgcatgcgccacaacctggccaatgcgttgaaa
ctggcagcgcaccgcgtgtcgattttgctgcgtggcgacaccgggaccggcaaggaagag
tttgccaaggcggtgcatcggggctcgccatgggcgaatggtgcgtttgtggcgatcaat
tgcgcggcgattcccgaggccttgatcgaaagcgaattgttcggctacgcacgcggcgcc
ttcaccgatgcggcgcgcgaaggccgccacggtaaattgctgcaggccagtggcggcacg
ctgtttctggatgaaatcggcgacatgccgctgccgttgcagagccgcctgctgcgggtg
ctggaagaacaatccgtcacgccgttaggcagcgaacgcgcggtaccgttggaactgcac
gtgatcagcgccagccaccgcgatctggcacagcgggtggcagccggcgagttccgcgag
gatctgtattaccggctcaatggcgtggtactccatctgccgccgctacgcgagcgcagc
gacaaggccgagctgatccgcaccttgctgcgcgaagaaaacagcgagcacagcgtgcgc
atcagcgaagaagcgatgcacaaattgctgagttacgcctggccaggcaatctgcgccag
ttgcgcaacgtgctgcgcacggcggcggtgctgtgcagcgatggggtgatccggctacca
aatctgccgcaggaaatcgtcgatgccggcagcgcgccgtgtctggtcgatggccgcgcg
gtggcggccgacgacatgcccggccgcgtcgcactcgatcaggccgagcgcctggtgctg
cagcagcaactcgaacgccatcgctggaacgtcagccgcaccgccgatgccttgggcatc
agccgcaatacgctgtatcgcaagctgcgcaagcatgggttggatacgggctga
DBGET
integrated database retrieval system
