Xanthomonas hortorum pv. gardneri: BI317_20960
Help
Entry
BI317_20960 CDS
T04668
Name
(GenBank) ligand-gated channel
KO
K16088
outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
Organism
xga
Xanthomonas hortorum pv. gardneri
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xga02000
]
BI317_20960
Transporters [BR:
xga02000
]
Other transporters
Pores ion channels [TC:
1
]
BI317_20960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
STN
Motif
Other DBs
NCBI-ProteinID:
APP86242
LinkDB
All DBs
Position
complement(4607473..4610001)
Genome browser
AA seq
842 aa
AA seq
DB search
MSITARRGQRFSSSFQRIASVRAAQRPISTAVAIALCSLALCAGMPDAMAQNAAATQEVR
QSYRIPAGPLAPALRNLAGSANLLLSFTAAQTDGKTTAGLDGSYTAPAALAALLAGSGLQ
AVPLETGGYVLRAAPRVSATRSEVDAWLLPTVKVTAQANRSAATSGSGSYTARAVSIGRG
EQSLKDIPQSISVVTRQLMDEQNITSVYDALASTTGITIVQSPQGGKYIYSRGFDITTVQ
YDGVPLNRGMYGRASNYSANMGIYDRAEVLRGAAGLLQGAGNPGGAVNLVRKRPLDVPGV
SVMVQGGTWDRYGALIDGSANLTADGALRARGVIDYQDQGSFVDGVTRRTPTYYGTLDYA
FSPQTQLSLGMSYEQVEGRPFFGGLPSFTDGRDIGLPRETNLGAQWNRQSSSNRGLYLDL
DHRFNDDWVFKLSAVQVRELHDLKYASSSRAINPANGTGALLAARTISDTDAFGFDANVI
GHFSALGRRHELVLGSNFAENTVDTVYGTKNNFQTFNVFDLQRNVRAISDDEIFANAREA
RHGTSREFGLYGALRWQLSDPLKAIVGTRVSWHDTEWNTTTTGLSPSQSIEHTRETGQVT
PYAGLVYALSPTWSAYASYADIFQPQNAQTEAGDMLKPMTGANYELGIKGEWLDGRINTA
FALFQIEQKNRAQADLTTSPTCRNNDFCYIDSGKVRSRGFDAEVSGEVLRDWNVFAGYTF
NRTTYLQDVTSQGQAFNSYTPKHLLRVWTTYRLPGVLQDVTVGGGVSAQSAAYRQIGTAI
APIEGRAVWNALARYQVNRQWSLAVNLNNVFDKQYYNTLSSFVNGRYYGEPRNVMVTLRG
AL
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatcactgcccgccgcggccaacgtttttcttcttcgtttcagcgtatcgcttct
gtacgggcagcacagcggcccatcagcacggcagttgcgattgcgctgtgcagtctggcg
ctgtgtgcaggcatgcccgatgcaatggcgcaaaacgcagccgccacgcaggaggtgcgg
cagagttatcgcattcccgccggcccgctggcaccggcgctgcgcaacctggccggttcg
gccaacctgttgctgagcttcaccgccgcgcagaccgacggcaagaccaccgccgggctg
gatggcagctacaccgctccggcggcgttggcagcgttgttggccggtagcggcttgcag
gcagtgccgttggagaccggcggctatgtattgcgcgccgcgccacgggtgagcgcgacc
aggagcgaggtggatgcgtggctgctgccgaccgtcaaggtgaccgcgcaggccaaccgc
agtgcggccaccagcggcagcggtagctataccgcgcgtgcggtgagcatcggccgcggc
gagcaatcgctcaaggacatcccgcagtcgatcagcgtggtcacccgccagttgatggac
gagcagaacatcacctcggtctacgacgcgctggccagcactaccggcatcaccatcgtg
cagagcccgcagggcggcaagtacatctattcgcgcgggttcgacatcaccacggtgcag
tacgacggcgtgccgctcaatcgcggcatgtacggccgggccagcaattacagcgccaac
atgggcatctacgatcgcgccgaagtgctgcgcggtgcggccggcctgctgcagggcgcg
ggcaatcccggtggcgcggtgaatctggtgcgcaagcgcccgctcgatgtgccaggcgtg
agcgtgatggtgcagggcggcacgtgggatcgctacggcgcgctgatcgatggcagcgcc
aacctcaccgccgatggcgcgttgcgcgcgcgtggggtgatcgactatcaggaccagggc
tcgttcgtggatggcgtcacgcgccgcacgcctacctactacggcacgctcgactacgcg
ttctcgccgcagacccagctcagcctgggcatgagctacgaacaggtcgaaggccggccg
ttcttcggcggcttgcccagctttaccgatggccgcgatatcggcctgccgcgcgagacc
aatctgggcgcgcagtggaaccggcagtcctcgtccaatcgcgggctgtatctggatctg
gatcatcgcttcaatgacgattgggtgttcaagctcagtgcggtgcaggtgcgcgagctg
cacgatctgaaatacgccagctccagccgtgcgatcaatccggccaacggcaccggcgcc
ttgttggcggcacgcaccatctccgatacggatgcgttcggcttcgatgccaatgtgatc
gggcatttcagcgcgctgggccgccggcatgagctggtactgggcagcaatttcgccgag
aacacggtcgacaccgtctacggcaccaagaacaacttccagaccttcaacgtgttcgat
ctgcagcgcaatgtgcgggcgatcagcgatgacgaaatttttgccaatgcgcgcgaggca
cggcatggcacctcgcgcgagttcggcctgtacggcgcgttgcgctggcagttgagcgac
ccgctcaaagccatcgtcggcacccgtgtgagttggcacgacaccgagtggaacaccacc
accaccgggctgtcgccgtcgcaatcgatcgagcacacccgcgagaccgggcaggtcacg
ccgtatgccggcctggtgtacgcgttgagcccgacctggtcggcctatgccagttatgcg
gacatctttcagccgcagaacgcgcagaccgaagccggcgacatgctcaagccgatgacc
ggtgccaactacgagctgggcatcaagggcgagtggctggacggccgcatcaacaccgcc
tttgcgctgttccagatcgagcagaagaaccgagcgcaggccgacttgaccaccagcccc
acctgccgcaacaacgacttctgctacatcgacagcggcaaggtgcgcagccgcggcttc
gatgccgaagtgagcggtgaagtgctgcgcgactggaacgtgtttgccggttacaccttc
aaccgtacgacgtatctgcaggatgtcaccagccagggacaggccttcaacagctatacg
cccaagcatttgctgcgtgtgtggacgacgtatcggttgccgggcgtgttgcaggatgtg
accgttgggggcggtgtcagtgcgcagagtgcggcgtatcggcagatcggcactgcaatc
gcaccgatcgaaggacgtgcggtgtggaatgcattggcgcgctatcaggtcaaccggcaa
tggtcgctggcggtcaacctcaacaacgtgttcgacaagcagtactacaacacgctgtcc
agcttcgttaacggacgctattacggcgaaccacgcaatgtgatggtgaccctgcgcggc
gcgctgtaa
DBGET
integrated database retrieval system
