Xiphias gladius (swordfish): 120782990
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Entry
120782990 CDS
T07311
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xgl04121
]
120782990 (pdzrn3b)
Enzymes [BR:
xgl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120782990 (pdzrn3b)
Ubiquitin system [BR:
xgl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
120782990 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Prok-RING_4
Sina_ZnF
PDZ_Tricorn
zf-ANAPC11
zf-TRAF
U-box
TRAF3_RING
RING_XB3-XBAT31
IBR_1
TRAF2_zf
Motif
Other DBs
NCBI-GeneID:
120782990
NCBI-ProteinID:
XP_039971557
LinkDB
All DBs
Position
LG21:complement(26966293..27060996)
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AA seq
1050 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLEIKCDNHARGCDAVVKLQHLAEHAEMCDYSPAKCRNKGCNELL
NLGDMDAHMRETCDYRPVGICEGGCGLMLTHKEQKFSSHCCLRALKAQNSALQCKMISLD
REFKKQTIKANKREKSLLAQLSAVHGELQVTAVKYQKKFTEYSERIDSLTKTVAFSCKEG
ETKSVTVVLLREGGSLGFNIIGGRPCADDNDSTSNEGIFVSKIVENGPADKEGGLQIHDR
IIEVNGKDLSKATHDQAVEAFRTAKEPIMVQVLRRAPHPKLVIPPADTQVSDISTQTDIT
LQHIMALSKLPPSSPPMTELEEYLLTDEHPQGHAYFDPNDFLEGIQQDIEREELEYEEVD
LYRANIQDKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIIQINGVEIQNR
EDAVALLTSEGNQNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDQTTASNTLG
SCRKLTYSQDTLGSTDLPFSSESFISADYTDYDFLGIPADECERFRELLELKCQMRSGGA
QSLYCQGGGAGGQDQEGVDKELELLNEELRTIELECLNIVRAHKMQQLREQCRESWMLHN
SGFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRGA
ENQGPAGASGSTSSNGRMLKPLLSPVQEACSPSRSRGSSKDPDGALQAESKERKLGESSK
AGRSFSQPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDPISPSDLE
PKMEWKVKIRSDGTRYITKRPVRDKLLRERALRIHEERSGMTTDDDAISELKMGRYWSKE
ERKQHAVRAKEQRQRREFMKQSRADCLKEQTGPEDKKEPNIIELSHKKMMKKRNKKIFDN
WMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggaccgcttcaaggggaccgtggacccggatttcaaatgcaacttg
tgcaataaagtcctggaggacccgctgacgactccgtgcggtcacgtcttctgctccggt
tgcgtgctgccctgggtcgtccagcagagcagctgccccgtcaaatgtcagcggatctcc
accaaagagctgaaccacgtcctgcctctgaagaacctcatcctgaagctggagatcaaa
tgtgacaaccacgcgaggggctgcgatgcggtggtgaagctgcagcatctggccgagcac
gcagagatgtgcgactattccccggccaagtgcaggaataaaggatgcaacgagctgctc
aacctgggggacatggatgcccatatgcgcgagacgtgcgactacagaccggtcgggata
tgcgagggcggctgcggactgatgctcacccacaaagagcagaaattcagcagccactgc
tgcctgagagccctgaaggcgcagaacagcgcgctgcagtgcaaaatgatcagcctggat
agagagtttaagaagcagactattaaagccaacaagagggagaagtcgctcctggcacag
ctgtccgccgtgcacggcgagctgcaggtgacagcggtgaaataccagaagaaattcacc
gagtacagcgagaggatcgactccctcaccaagaccgtggctttctcctgcaaggaaggc
gagactaaaagcgtgacggttgtccttcttcgtgagggtggatctctgggttttaacatc
ataggaggaaggccatgcgcggatgataatgacagcacttcaaatgaagggatctttgta
tccaagatcgtcgagaatggtccagcggacaaggaaggaggccttcaaatccacgacaga
ataatagaggtcaatggcaaggacctctccaaggccacccacgaccaggcggtggaggcc
ttccgcaccgccaaggagcccatcatggtccaggtcctgcgccgggcccctcaccccaaa
ttggtcatcccccctgctgacacccaggtctccgacatcagcactcagaccgacatcacc
cttcaacacattatggccctcagcaagctgcctccctcttcacccccaatgacggagctg
gaggagtatctgcttacagacgagcatccccaaggacatgcatactttgaccccaatgat
ttcctggagggcatacagcaggacatagaacgtgaggagctggaatatgaggaggtggat
ctgtaccgagccaatatccaagacaagctcggcctgaccatctgttataggactgatgat
gaggatgaggctgggatctacattagtgagattgatccgaacagcattgctgcaaaggat
ggcaggattcgagagggggacaaaatcatccagatcaatggcgttgagatccagaaccgg
gaggatgctgtagcactgctgaccagtgagggaaaccagaatatctccctgctggtggcc
aggccagagatccagctggatgagggctggatggacgatgacaggaatgacttcctggat
gacctccacatggacatgctggagcagcagcaccatcaggccatgcagttcactgccagc
atgctgcagcagaagaagcatgaggaggatggaggcaccacggacacagccacgctgctg
tccaaccaccacgagaaggacagcggggtcgggcgcacagacgagagtacgcgaaatgac
gagagctcggagcaggagaacctcggtgatgaccagactacagcctccaacacgctaggc
agctgcagaaagctgacctacagccaggacaccctcggcagcaccgacctgcccttcagc
agcgaatcgttcatctctgctgactacactgactacgacttcctgggcatcccagccgac
gagtgtgagcgcttcagagaactcctggagctgaagtgccagatgaggagcggtggagcc
cagagtctgtactgccagggcggcggggcaggaggtcaagaccaagagggtgtggacaag
gagctggagctgctcaacgaggagctgcgcaccatcgagctggagtgcctgaatatcgtc
cgtgctcacaagatgcagcagctgagggagcagtgccgtgagtcctggatgctccacaac
agcggcttccgcaactacaatactagcatagatgctcgccgccatgagctctcagacatc
acagagctgccagagaaatcagacaaggacagctccagtgcctacaacactggtgagagc
tgccgcagtacccctctgactctggagctgtctccagacaactcgctccgccgaggagcc
gagaaccagggtccagctggggcgtctggctccaccagctccaacggcaggatgctcaag
cccctcctgtcccctgtccaggaagcctgtagccccagccggagcagaggctcctccaag
gatccagatggagccctgcaggcagagagcaaggagaggaagctgggagagtccagtaag
gccgggcggagcttttcccagccacactcaccttataagcatgctcacatccctgcccat
gcccagcactaccagagctacatgcagctgatccagcagaaatcagccgtggagtatgcc
cagagccagatgagtttggtcagcatgtgccgagaccctatcagccccagtgacctggag
cctaagatggagtggaaggtgaagatccgcagcgacggcacacgctacatcaccaagcgg
cccgtccgggacaagctgctgagggagcgcgccctccgaattcacgaggagcgcagtggc
atgaccacagatgacgacgccataagcgagctaaagatgggccgctactggagcaaggag
gagaggaagcagcacgctgttcgggccaaggagcagagacagcgccgcgagttcatgaag
cagagccgagccgattgtctaaaggagcagaccggcccagaggacaaaaaggagcccaac
atcatcgaactcagccacaaaaagatgatgaaaaagaggaataagaaaatatttgacaac
tggatgacgatccaggaactgctgacccacggtaccaagtcaccagatggcaccagggtt
tacaactcactcctgtctgtgaccacagtctaa
DBGET
integrated database retrieval system
