Xiphias gladius (swordfish): 120783134
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Entry
120783134 CDS
T07311
Symbol
col7a1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120783134 (col7a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Kunitz_BPTI
VWA_2
Pur_ac_phosph_N
DUF4992
VWA_3
Motif
Other DBs
NCBI-GeneID:
120783134
NCBI-ProteinID:
XP_039971817
LinkDB
All DBs
Position
LG21:17816008..17880028
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AA seq
3110 aa
AA seq
DB search
MRPGARSRDPQVVKMWSWVFTVTILLSSMKHAEAQGRCNNVQAADIVFLVDGSSSIGRAN
FLQVKGFMAGIVKPFASSVSDSGIRFGAIQYSDTSRVEFTLTTYLNGTELVNAVQNLNYK
GGNTRTGAGLKFVADNFFNPATSRDVPKITILITDGKSQDIVQEPAQKLRSQGVHVFAVG
IKSADRNELAQISSQPSSDFTSFVGDFKLLNTLLPLVSPRVCSKAGGVYASDEAFSGPSN
VQFTGQTSDSLRFRWSPAGGPVSGYVVQYVPLSGLGQPITAELRQETVSASQRTFTAREL
RSGTDYLVTIIAQYPNSVGESASAKQRTRSLPGVSSLRLIQAGFFSLTVGWDQPSTPVQG
YRLTYGLRGQPAAQLLEQSLSADSTSVTLESLQPDTEYVISLYPLFPRNSASPSILNART
LRLEAVKQLSVETESEGSVRLRWRGVSGARAYRLVWGPFTGRNVETVEVAGDSEFHTLSR
LQPDTEYIVTIIPLYEGNTEGPVATARFKIERQEQQVLRAATTGPSSIRLTWRIIQSSRG
YRLEWREGEGGRVQSLSFPRSTTSYELTGLRPNTEYIITLYTLFEGREEATPVSTTSREE
QPVGRVSNLRVVESLGSTVRLGWTGVAGATQYRIIILNTEVGTEEIRTVPGNQTTLDLRD
LTVGVSYGVSVTALVGENEGDPVTVYIKPEQGAGRVTNLRVTNANSRRIRIAWTGVTGAT
GYRVTWRQSNNAEQSRLLGAEAMAFTIDGLQPDEALVIGVAAVVDQRVGEVVTLSARTNP
HSGSVSGLRTIDVTSQRIRIAWSLSTRATGYKITWRRDDGVETTRNVGADVSSFTIDELQ
SDSTYSVLVSALTGSREGSPSTLNVRTESDQSVVGTVTSLQVQETRGEVVRVTWVGVQGA
TAYRVSWRRTDGGEKRSQLVGGDVTAVDLDRLDPGAQYEVQVMALVQNREGTPVSVRVTT
PGAYTPPSSLPTTSLRVAEVTQSSARLDWISLPGVTGYILRWREDTDIGRGLSVSLPASS
SSYQVTGLRLGRRYRFSVQPTFESGLGTESSVDERTVCIGGRLDVVFLVPASTDRISLAR
PLRELVTSAAGSLNTIGARDSQVGVVVYGYRPKIWFLLNRHARSDTLLQEIQSTPFDESP
GNNIGEAVTFTRQYLLIPSAGRRPRVPGAVVIIADKRSADNLTVAASSLRATGVTVLAMG
IDQADIEELRRAVTDGSTQNILYARDAAQLDTLHTDLADLLCGIARISEAVPGTDQCTIQ
CPQGGKGDRGEKGERGRDGADGRKGEPGRDGLPGRDGPRGPEGRPGPPGQTIPFDPSVGV
KGEKGERGFPGIDGNPGLPGRSGAPGNSGVPGSQGLPGIRGDPGEPGTAGPQGPKGNKGE
RGEPGSAVSGGGFPGRKGEPGIPGIPGTSGRPGSNGAKGASGVPGSPGQDGLPGIPGTSG
VSIKGEKGSPGERGPPGVGSGVAVKGEKGSPGTLGPPGAQGPRGQTGPQGSKGDKGDGGD
GLPGPPGRQGEPGDRGARGPPGEIGSKGDRGQPGEPGSQGDRGERGPVGETGERGDPGKP
GLSGTPGLRGLPGLSGPPGEKGNDGARGEPGRSTPGLPGKKGEQGERGLPGPEGQRGEKG
ESGLRGEKGSPGSGGSGVVGAKGEPGERGLSGISGRPGAKGDPGEPGDRGENGRPGIPGK
PGLSGKEGEKGEKGDEGTPGESGLPGKSGERGLRGLAGQPGRPGEKGDIGDPGEHGRNGS
PGPAGVRGEKGEQGPQGPPGPPGKVTEIQGQLKGGRGEKGDTGEHGIGGQKGEAGTPGAP
GLRGPEGQRGPAGTRGDTGERGAPGEKGERGVSGLDGRPGLDGKPGATGPLGQRGDPGKQ
GDPGRDGLPGLRGQQGPPGPVGPSGIPGTPGKSGDAGKPGPPGKMGEDGVPGEDGRKGDK
GEAGAPGRDGRDGQKGDRGLSGPVGPSGPPGPPGVPGGIGPPGKVVYIKGVEATPIAGPQ
GPQGTPGVPGIPGAIGARGERGIPGLKGEAGDPGEDGAPGKPGTAMDVRTGLATLGIKVS
DLKVIVDRKDIPPPVQKGERGEKGDRGEPGQRGPSGVDGARGFAGERGAKGEQGERGPMG
TTGPPGRAILEPGPKGPPGPAGEPGKPGIPGVPGRAGELGEAGRPGDKGERGEKGDKGEA
GKIGLTGPAGPPGQKGASADMVMPGTPGARGPPGLAGQRGEPGAAGPPGPKGDRGFLGPQ
GDKGDRGESGEKGRDGSSGTPGEPGKPGQDGKPGLPGFPGVLGRPGNPGEPGMRGPTGPM
GPNGLPGPSGVKGNQGEPGVGVQGPPGAQGSTGLPGPPGPPGAVGPQGPTGLPGQVGESG
KPGIPGRDGVPGKEGIPGLPGKQGIAGPPGQTGLKGEQGDSGPPGKAMAGPPGHKGEKGL
PGQTLPGTTGERGLSGEKGNRGDKGASGIKGERGVAGEPGDPGEDGAQGSPGPKGDKGEK
GIGMAGPPGRVGPQGLKGDPGLPGPAGPPGPQGKSGDIGRPGLTGETGQPGPPGPQGERV
GGAADGTILVSKALQAVQEMLAFLVLLDLLEKQVLLVLTGSKGTRGKLALGSLVSEGREE
IQDPEARRVVLAWMGREGQQVPQGFVVLGGRRETSDCKVTKERRGTLCWWEDLLEKRETK
EKRFPFQGDRGPKGVQGEKGVKGQEGPPGEQGLRGEPGERGSTGFPGARGPGGQKGEAGQ
PGVPGELGLSGKDGLPGRKGEKGEIGIVGMRGIKGDRGTKGACGGDGPKGEKGNAGIHGR
SGLPGRKGEQGDVGPPGAPGIPGKEGLVGPKGDRGFDGVTGPKGSQGEKGERGPPGVPGP
PGPRGVDGAHGLTGPQGLAGAKGPEGLQGQKGERGPIGPAMIGPRGIPGIPGERGEQGEM
GPDGAKGDRGEPGMTEDEIRDYIHSEMSQHCACGGSGPNTRSQPTVRARPAPEQQVVLKG
EEGRELHVVMNTNDPDYEHIYSIEAYDDPLDELLYFTPSANQSDDEAVKKESEKTVKVEP
NKSPDVQKTARAGGQKAVKTAPLKAVNSRLVRPKRRVQGEAPADLCQLPMEEGSCGRYTL
RWYFNSQAQACRPFIYSGCEGNNNRFIHLEECEEVCLGVAEGPRPSKTGR
NT seq
9333 nt
NT seq
+upstream
nt +downstream
nt
atgcggcccggtgcacggagcagagatccgcaggttgtaaaaatgtggagctgggttttt
actgtgaccatcctgctgtcctccatgaaacatgctgaagctcaaggcaggtgtaataat
gtgcaagcagcagatattgttttcctggtagatgggtcttccagtattggccgagctaac
ttcctgcaggtgaagggcttcatggctggaatcgtcaaaccattcgccagctctgtcagc
gattcagggatacggtttggggccatacagtatagtgacacttccagggtagaattcacc
ttaactacctacctgaatggcaccgagctggtcaacgccgtacaaaatcttaactataaa
ggtggaaacacacgcactggtgctggtctcaagtttgtcgctgataacttcttcaaccct
gcaaccagtcgggatgtcccaaagatcactatactgatcacagatggcaagtcacaggac
attgtgcaagaaccagcacagaagctgcgcagtcaaggagtgcatgtttttgccgttggc
ataaagagtgcagacaggaatgaactggctcagatatcctctcagcccagcagtgatttc
acctcctttgttggggatttcaaactgctgaacacacttcttcctcttgtgagtccccga
gtgtgttccaaagcaggaggagtctatgctagtgatgaggcattttctggtccgtccaac
gttcagtttacagggcagacatctgattctctcaggtttcgttggagtcctgcagggggg
cctgtgagtggctatgtagtccagtatgtgcccctctccggcctgggtcagcctatcaca
gcagaattgcgtcaggagactgtctctgctagtcagaggaccttcactgcccgagagctg
aggtcagggacagactacctggtgactatcatcgctcaataccccaacagtgtgggagag
tctgcctctgccaagcaacgaaccaggtccttgccgggtgtctccagtctacgtctgatc
caggcaggcttcttctctctcactgtgggctgggatcagccttcaactcctgtccagggc
tacagactcacctatggactacgaggtcagccagcggcacagctgttggagcagtctctg
tctgcagactcaacatccgtcaccttggagtcgcttcagcccgacacagagtacgtcatc
agtctctaccccctgttcccccgaaactctgcgtccccgtccatcctcaatgcccgcaca
ctgcgccttgaggcagtgaagcagttatcagtggagacggagtcagagggcagtgttcgt
ttgcgatggagaggcgtcagtggtgctcgggcctaccgtctagtctggggaccatttaca
ggtcgaaatgtcgagactgtggaggtcgctggtgacagtgaatttcacactttgtccaga
ctgcagcccgacacagagtacatcgtgactatcatcccgctgtatgagggcaacactgag
ggccctgtagccactgccaggttcaagatagagcgtcaggagcagcaggtcctcagagca
gctaccaccggcccctcctctatccgcctcacctggagaatcattcagtcctctcgaggg
tatcgtctggagtggagggagggggaaggaggccgtgtccagagcctgtcctttcctaga
agcactaccagctacgagttaacagggctgcggcccaacacagaatacatcatcaccctg
tataccctgtttgagggtcgtgaggaggccacacctgtctccaccacatccagagaggag
cagcccgtggggagggtgtccaaccttagagtcgtggagtctctgggcagtactgtcaga
ctgggctggaccggtgtagctggggccactcagtaccgcattattatcctgaacacagaa
gtgggaacagaggaaatccggactgtccctggaaaccaaacgacccttgacctcagagac
cttacagtgggagtatcttatggcgtcagtgtcacagcactggtgggagaaaatgaaggc
gaccctgttaccgtctacatcaaaccagagcaaggtgctggcagagtgaccaacctaaga
gttacgaacgcaaacagtcggaggattcgaattgcctggacaggtgtcactggggcaaca
gggtacagggttacttggagacaaagcaacaatgcggagcagtcccgtcttctgggggca
gaggccatggccttcaccatagacggcctgcaaccagatgaggcactagtaattggtgtt
gcagctgttgttgatcagcgcgtcggagaggtggtcacactgtctgctcggactaatccc
cacagtggatcagtgtctggacttcgcaccattgatgtcacatctcagaggatacgcatt
gcatggtcgctttccacgagggcaactggctataagatcacctggcgtcgcgatgatgga
gttgaaacaactcgtaatgtgggagctgacgtctcttccttcaccattgatgaactacag
tcagattcaacttatagcgtgctagtttctgcactgactggctcccgtgagggaagccct
tccaccctgaatgtcagaacagaatcagatcagtctgtggttgggactgtgacatcactg
caagtccaggagacccgtggagaggttgtccgtgtcacttgggttggtgtgcagggagca
acggcttatcgtgtttcttggaggagaacagatggtggtgagaagaggagtcagctggtt
gggggagatgttacagcagtggatttagaccggctggaccctggagctcagtacgaggtg
caggtcatggctttagttcaaaacagagagggaacccctgtgtctgtcagagtcaccaca
cccggtgcctatacccccccttcctcactacctaccacaagtttacgagtggcagaggtc
acccagagttctgcgcggctagactggatttcactaccaggtgtcacaggatatattcta
cgctggagagaggacacagatattggtcgaggcttgtctgtgtcgctgcctgcttcgtcc
agctcttaccaggtgactgggctgcgtttgggccgtcgatatcgctttagtgtgcagccc
acctttgaaagtggattgggaacagagagctctgtagatgaacgcactgtgtgtatcggc
ggccgtctggatgtggtgtttctggtgccggcatctaccgatcggattagccttgcaaga
cctctgcgagaactcgtaacaagtgcagcggggtcactcaacaccattggagcccgtgac
tcacaggtgggagttgtagtatacggttacagacccaaaatatggttcctgctcaatcgc
catgccagatctgacacactgctccaagagatccagtccacaccctttgatgaaagccca
gggaataacattggcgaggcggtgaccttcaccagacagtaccttctgatcccctcggct
ggacgtagaccaagggtccctggtgctgttgtcatcatcgctgacaaaagatctgctgac
aacctcactgtcgcagcgagcagtctcagagctacaggtgttacagtgttagcaatgggt
atcgaccaggcggatattgaggagctccgtcgcgctgtgacagatggcagcacccagaac
atcttgtatgcccgtgatgcagctcagctggacacactacatactgatctggcagacttg
ctctgtggaattgccagaatatcagaggcagttccagggacagaccagtgtaccattcag
tgccctcagggtgggaagggagatcgtggagagaagggtgagagaggcagagatggtgca
gatgggcgcaagggagagcctggtcgtgatggcttgcctgggagggacggccctagaggc
cctgaaggacgcccaggtccaccaggccaaactatcccctttgacccttcagtgggggtg
aaaggagaaaagggggaaagaggttttcctggtattgatggaaatccagggttgccagga
cgatcaggtgcccctggaaattcaggggtcccgggttcacagggtctacctggtatcaga
ggagacccaggtgaaccaggtacggcagggccacaagggccaaagggcaataaaggtgaa
aggggtgaaccaggctcagctgtatctggagggggtttcccagggagaaaaggagaacca
ggcatcccagggataccgggtacttcaggccggccaggcagcaacggggccaaaggggcc
tccggagttccagggtcaccaggtcaggatggtctcccagggattccaggaacatcagga
gtctccatcaagggagagaagggcagcccaggagagaggggacctccaggagtaggcagc
ggggtggccgtgaagggcgagaagggctccccaggtactctgggacctccaggggctcag
ggtcctagagggcaaacaggaccacagggcagcaaaggagacaagggcgacggtggtgat
gggctgcccggacctccaggcaggcaaggagaacctggggacaggggtgcccgtgggcct
ccaggagagattggcagcaagggtgaccgaggacaaccaggtgagcccggatcacaggga
gacaggggcgagagaggaccggttggtgaaactggggagagaggggacccagggaagcca
ggcctctcaggaacaccagggttgagaggtttaccagggctcagtggaccgccaggagaa
aagggaaatgatggagcgcgaggggagcctggcagaagtactccaggtttgccaggaaag
aaaggggaacagggggagcgcggtctgcctggtcctgaggggcagaggggagaaaaagga
gaatctggactgagaggagagaaagggtctcctgggtcaggagggtcaggtgtcgtcgga
gctaaaggagagcctggagagcgaggactttctggtatcagtggaaggccgggtgccaag
ggagaccctggtgaaccaggagacaggggggagaatgggcgcccaggaatcccaggaaag
cccggactttctgggaaagagggagagaaaggagagaagggtgatgaaggcactcctggg
gagtctggacttccggggaagtcaggagaaagaggactgaggggactggctggtcagccc
ggacgaccaggagagaaaggagacataggcgaccctggagagcatggacgaaatggcagc
cctggacctgcaggcgtgagaggagagaaaggagaacagggacctcaagggccaccagga
ccaccaggaaaagtgactgaaatccaaggccagctgaaaggagggagaggagaaaagggc
gacacaggagagcatggtatcggaggtcagaaaggcgaagcagggactcccggagcccca
ggtctacgaggtcctgagggacaacgggggcctgcaggtacaagaggtgacacaggagaa
agaggagcacctggagagaagggagaaaggggtgtctccgggttagatggacgtccaggt
ctggatggtaaaccaggtgctactggaccacttggacagaggggggatcctggaaaacag
ggggatcctgggagagatggtttaccaggacttagagggcaacagggccccccagggcct
gttgggccttcaggcattcctgggacacctggtaagtcaggagacgctggaaaacctggg
cctcctggaaaaatgggtgaggatggagtgccaggtgaagatggcagaaagggtgacaaa
ggagaagcaggagcacctggaagagatggccgtgatgggcagaaaggagaccgcggcctt
tctgggcctgtaggcccctctggtcctccggggccacctggagtacctggcggcattggt
cctcctggaaaggttgtgtatataaaaggagttgaagcaacaccaatcgcaggcccacag
gggcctcaaggaacccctggcgtccctgggatcccaggagctattggagccagaggagag
agaggtattcctggccttaaaggtgaagctggggacccaggagaggacggggcgccgggc
aaacctgggacagcaatggatgtacggacgggtctggccactcttggtattaaggtgtct
gatctgaaggtcattgtggacaggaaggacatacctcctccagtgcagaagggagaaaga
ggtgaaaaaggagacaggggggagccaggacagagaggaccatctggtgtagatggtgct
cgtggttttgcaggagagaggggagcaaaaggggaacaaggggagcgaggacccatggga
acaacagggcctcctggaagagccattttagaaccagggccaaaggggcccccaggacct
gctggagagccaggcaagccaggaataccaggtgttcctggacgagctggggaactgggg
gaggctggtagaccaggagataagggggagaggggagagaaaggtgacaaaggagaagct
ggaaaaatcgggctaacagggccagctggcccaccgggtcaaaagggagcatctgctgat
atggtaatgcctggtacgcctggggccaggggccctccagggcttgcaggacagagggga
gagcctggtgcagcaggaccaccaggacccaaaggagaccggggttttttgggaccacaa
ggtgataaaggagacagaggagagtctggagaaaaaggacgtgatggctcgtcgggaaca
ccaggagaaccaggaaaacctggtcaggatgggaaaccgggcctgcctggattcccagga
gttctaggcagaccgggaaacccaggagagcctggcatgagggggccaactgggcccatg
ggtcccaacgggcttccaggtccatcaggtgtgaagggtaatcaaggagaaccaggtgtt
ggtgtccagggtcctcctggtgctcaggggagcacaggtctgccaggaccaccaggtcct
cctggagctgtaggtccacagggccctactggactgccagggcaggtgggagaatcaggt
aagcctggaattccgggaagagatggggtgcctgggaaagaaggaatacctggattacca
ggaaagcagggcattgctggacctccaggccagaccggcttaaaaggagagcagggagac
agcggtcctccaggaaaggcaatggctggacctcctggacacaaaggagaaaaaggtctt
cctggtcaaacactgccaggcacgactggagaaagaggtctatctggggaaaagggtaac
agaggggacaaaggtgcttctggcatcaaaggagagagaggagtggctggtgaaccagga
gaccctggagaagatggggcacagggatctcctggaccaaaaggagataagggggagaag
ggcataggaatggcaggaccacctggtcgggtcgggcctcaaggtttaaaaggggatcca
ggccttcctggtccagctggtcctccagggccacaggggaagtctggcgatatcgggcga
cctggcctgacaggggaaactggacaaccaggacctccaggaccgcagggggagagggtc
ggtggagctgctgatggcacaatactggtctccaaggctttgcaggccgtgcaggaaatg
ctggcattcctggtcctcttggacctcctggaaaagcaggttctcctggtactgacggga
tcaaaggggacaagggggaagttggcgttggggtccctggtctcagaggggagagaggag
atccaggacccagaggcgaggagggtcgtgctggcttggatggggagagagggccaacag
gtcccccagggtttcgtggtgctcggggggagaagggagacatcggactgcaaggtgaca
aaggagagaagggggacactgtgctggtgggaggacctcctggagaaaagggaaacaaag
gagaaacggtttccatttcagggtgacagagggcccaaaggagtgcagggagaaaaaggg
gtgaagggtcaagagggacctccaggggagcagggtctgaggggagagccgggagaaaga
ggatccactggattcccaggtgcccgtggccctggtggacagaagggagaagccggtcaa
cctggagtacctggcgaattgggtttatcaggaaaagatgggctgccagggcgtaagggg
gagaagggagagattggtatcgtaggaatgagaggaatcaagggtgacagaggaaccaag
ggggcttgtggaggtgacggacccaaaggagagaaggggaatgctggtattcacggacga
tcaggcctacccggaagaaaaggggaacagggggatgtcgggcctcctggtgctcctggg
atccccggaaaagaagggctagtaggccccaagggtgaccgtggttttgacggggttact
ggacctaaaggatctcagggagagaaaggtgaaaggggtccgcctggtgtacccggccct
cctggtcccagaggagtggacggggcccacggcctaactggccctcagggactggctggt
gctaaaggccctgaggggctccagggacagaagggggagagagggcccattggtcccgcc
atgatcggtccacgcggtatccctggtatcccgggtgagagaggagagcagggagagatg
ggcccagatggagccaagggagacagaggagagccgggcatgacggaggatgagatcaga
gattacattcactcagagatgagtcagcactgtgcgtgtggaggttcaggcccgaacact
cggtcccagcccacggtcagggctcggcctgcaccagagcaacaagtggtcctgaagggt
gaggagggccgtgagctgcatgtagtgatgaacaccaacgacccagactacgagcacatt
tactcaatcgaggcctacgacgaccccttggatgaactgctctacttcactccttctgcc
aatcagagtgacgatgaggctgtcaaaaaggaatcagagaaaacagtcaaagttgaacca
aacaaatctcctgacgttcagaaaacagcaagagctggtggtcagaaagcagtcaaaact
gcacctctgaaagcagtcaattccagattagtcaggcccaagaggagagtccaaggggaa
gctccagctgacctgtgccagctgcccatggaggaggggagctgcggtcgatacactctg
cgctggtactttaacagtcaggctcaggcctgcaggcccttcatctacagcggctgtgaa
ggaaacaacaaccgcttcatccacctggaggagtgtgaggaggtctgccttggggtggcc
gaaggtcctcgtccctcgaagacaggacgatga
DBGET
integrated database retrieval system
