KEGG   Xiphias gladius (swordfish): 120783331
Entry
120783331         CDS       T07311                                 
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
xgl  Xiphias gladius (swordfish)
Pathway
xgl03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:xgl00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    120783331 (cstf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xgl03019]
    120783331 (cstf1)
Messenger RNA biogenesis [BR:xgl03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     120783331 (cstf1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd CSTF1_dimer WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EIPR1 WDR90_beta-prop_4th NBCH_WD40 Beta-prop_Aladin Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_NWD2_C Beta-prop_IFT140_1st Beta-prop_VPS8 Ge1_WD40 Beta-prop_SPT8 PROPPIN Beta-prop_WDR11_1st Frtz
Other DBs
NCBI-GeneID: 120783331
NCBI-ProteinID: XP_039972187
LinkDB
Position
LG21:complement(29968972..29986820)
AA seq 431 aa
MYRPKPTLKDRQHLYKLIISQLLYDGYTNIANSLINEVKPQSVVSPSEQLMQLAKLGMEN
DDSAVQYAIGRSDTVAPGVGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFLLVGTQHPT
LRLYDVNTFQCFVSCNPLDQHTDTISGVSYNPTANSYVTCSKDGSIKLWDGVSNRCVTTF
EKAHDGAEVCSAIFSKNSKYILSSGKDSVVKLWEISTGRTLVKYTGAGLSGRQMHRTQGV
FNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRTTTD
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgtatcgtcccaagccaactttgaaggaccggcagcacctgtacaaactcatcataagc
cagttgctctacgatggatacaccaacattgccaacagtctcatcaatgaggtcaaacca
cagagcgtagtgtcgccctctgagcagctgatgcagctggcaaagttagggatggagaat
gatgacagtgcagttcagtatgccatcgggcgctcggatacagtggcacctggagtgggt
attgatctggaattcgatgctgatgtccagaccatgtctccagaggcatcagagtatgag
acctgctatgttacgtctcataagggtccatgccgtgtcgccacatacagtcgtgacggc
cagttgattgccactggctctgctgatgcctccatcaagatcctagatactgagcgcatg
ctggccaagagcgccatgcccattgaggtgatgatgaatgagacagcgcagcaaaacatg
gagaatcaccctgtgattcggacactgtatgaccacgtcgatgaagtcacctgtcttgct
ttccatccgactgaacagattctagcttctggctcaagagattacaccctcaaactgttt
gactactcaaagccctctgcaaaaagagcatttaaatatatacaggaagcagaaatgttg
cgttcaatctccttccacccatcaggtgacttcctgctggtgggaacgcagcaccccacc
ctccgtctctatgatgtcaataccttccagtgcttcgtatcctgcaacccactggaccag
cacacagacaccattagcggcgtcagctacaaccccaccgccaacagctacgtcacctgc
agcaaggatggcagcatcaagctgtgggatggtgtctccaaccgctgtgtgaccaccttc
gagaaggcccatgatggggcagaggtctgctctgccatcttctccaagaactcgaaatac
atcctgtccagtggcaaagactccgtggtgaaactgtgggagatctctacaggccgaaca
ctggtcaagtacacaggtgcaggtttgagcggccgtcagatgcatcgcacacagggcgtg
ttcaaccacacggaggattacgtgctgctgccagatgagcgcaccatcagcctgtgctgt
tgggactctcgcacggccgagaggaaaaacctgctgtctttgggacacaacaatatcgtc
cgctgcatcgtccactcgcccaccaatcctggcttcatgacctgtagtgatgacttcagg
gcccgcttctggtaccgccgcaccaccacagactga

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