Xiphias gladius (swordfish): 120783506
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Entry
120783506 CDS
T07311
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RBBP6-like
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xgl04121
]
120783506
Enzymes [BR:
xgl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120783506
Ubiquitin system [BR:
xgl04121
]
Ubiquitin ligases (E3)
U-box type E3
120783506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
zf-C3HC4_2
zf-C3HC4_3
U-box
zf-CCHC
zf-RING_5
zf-RING_2
zf-C3HC4
zf-C3HC4_4
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
120783506
NCBI-ProteinID:
XP_039972532
LinkDB
All DBs
Position
LG3:complement(9617909..9639725)
Genome browser
AA seq
1895 aa
AA seq
DB search
MTHVHYKFSSKLSYDTVVFDGPHITLRDLKRQIMHREKLRAGDCDLQITNAQTKQEYTDE
EGLIPKGSSVIVRRIPIIGGKSSSSNKTHNIERSDAQLHHTFGTIKAMDDQTSSSALPFF
SKMANLADADVSEEDKIKVMLNQSTYDSMNYNKKFGTVLPANYTCYRCGNTGHHIRNCPT
SGQDKNFEAPLRIKKSTGIPRSFMVEVDDPNIKGAMLTNCGRYAIPAIDAEAYAIGKKEK
PPFVPQEQPKLEAEEDPVPDELLCLICHDLLSDAVVIPCCGNSYCDDCIRTTLLDSEEHV
CPTCSQSNVSPDTLIANKFLRQAVNNFKKERGFTKGLARRCGTSQSQNPTPTPSPVPTPP
PLILQSQPQKSYQATYSQQDSLLHRPQAADTPPLYGNPPAATGPASACNTPSTSLQTEQI
CLEISDKKAEGETYDDSAAAAAAAAPAPAPAPAAPAAPAAPAAAAAAAAAAPSVLVSNKE
PSAPPSLVNPTTVAEQPQTVTVNQQQSTLGPAPRHSGPSTCWGSSSSSSGCPTGRWTESQ
QLTSSSSSSYSATTPPLFPSPLFHTYLPTQQSHSSYPPGYPPTTPIWTLPCPQGAPIPSL
CSSASTSSIPALIPKEWYRHQRKKERSPHRGSTYRRSTSRSNSKSSKSKSSRSYSRSSSR
SRSRSRSRSQGRSRPRSPYYRDVHTRSHPSHAYSYGYKRSRSPTPSSSSSPQVGYHSRSK
SPSDHRKNRHHSRHHTKKSTSSSYSSRRRGECTGREAGGSGVSLAGSLYTQHATQTSSLE
LDNRERYLQWKEEYREWCEKYFSSYVGHFHQLPLPFLNLPPPPQWEGSKNHSHANSDPRY
QHTAQTDGHSPQSQSSSDSRSPPSQSSSDSRSTPSQLSSDSRSSPSNTSTDSRSPPSQSS
SDGRSTPSEDRARPKAYQKQMDSHLPVRLTKSSKEVDLQERSKDDKRVIIKNLDDLNTSK
YEQRRRKKHEEGRGEDSSSPDSRKDGRGHNIGPHACKDGTSVRDKATANDTIKSAQPSMK
PDKSLDKDCERKSREQRNLEREKEWRRGKDSDSRQDVERRCKIRPCKEADRVVSDRYRNP
GGSKAPDIRSENRKRKGENLERNETYKSKSPSQFERKMQKTEQKMERKTWPLTKSNIWEG
GITVKPQKKISININLDGKRKEEKTEKQESMEGKSKEEIEKTGDGEVEKLNRGDTEVEVN
ENKESSREEEGVFEEKIKPDDGEARQLWEKATFRDDKREMWEKIAGEKEDREKKEDGEEK
DFDLWHCALKGVNEEKECKKQWEEGDGMKASKGEEVTRDERRNMTGKEEEEGRVRKESQG
QEMGELVQIFQKESAAGESTCKENRGNLQGELKPKEALMEDAKWRMRKEEDTSSNKSHRD
RPNSNMVDGSGCEDCQERTTVVKTLEEYTEHRAAEKEDHLVLIQVPRSKWEKEESEEEEQ
KEGEIKNQDPLPVVLPPPFVTPTNRETEGENEPKRQRSVDIKRDRDRVMQRGRDREKEKI
STLSSSDRSVAPSSGKDRTDSTLYTDSQRERRTGMERWKDKERGRESERPRDRQKERRRS
KERTKEEERGRDRGREGGYSSIASVQKKNLPSSSHFSYSTSQDLERRDRQRGGDQDHEKS
SNSSRPGGKLSGSGSRERSSISRAAELPDKHAHKTYRDTLPDSKRKDKNHPHDYHNHRDP
SGNYKHQDRPAGTHHSSPSLPQSQGKERDPHPSESSSPKPSKPRMSSPGRELMQNQNRNE
SEEEKGEWKRNKXDKVIKESKGERETEEMEAKREVGSEWQDQVDELAGETKWEGGRELEE
GERPSSQSRSSSVSSSASQENSKDDRRKERKKKHKKEKSQATPELLEEGELKKHKHKKKK
SKRNKDGREEESGGELDDKWKEEDEHAKLCSFMLS
NT seq
5688 nt
NT seq
+upstream
nt +downstream
nt
atgactcacgttcattataaattctcctctaaactcagctacgacacggtggtttttgac
ggcccgcacatcacgctgagggacctgaagaggcagatcatgcacagggagaagctgaga
gccggggactgcgacctgcagatcacaaacgcgcagaccaaacaagagtacacagacgag
gaaggtctcatccccaaaggctcctctgtcatcgtccggagaatccccatcatcggaggc
aagtccagctcaagcaacaagacccacaacattgagcgttcagatgcccagcttcaccac
acctttggaaccatcaaagcaatggatgaccagacttcttccagtgcgttgccctttttc
tccaagatggctaacctggctgatgcggacgtgtcagaggaggataagatcaaagttatg
ctaaatcagtcaacctacgattccatgaattacaacaagaagtttggtactgttcttcct
gcaaactacacttgttatcgctgtggaaataccggacaccacatcaggaactgtcccacc
agcgggcaggataaaaattttgaggccccactgagaataaagaagagcacaggcatccct
cgttccttcatggttgaggtggatgatcccaacataaaaggagccatgctgaccaactgt
ggacgttatgccattcctgccatagatgcagaggcatatgccattgggaagaaggagaag
cctccatttgttccacaggaacaacccaagttagaagccgaggaggatcctgtacctgac
gaactcctgtgtctgatctgtcatgacctgctgagtgatgccgtggtcataccttgctgt
ggaaacagctactgtgatgactgtattcgcaccaccttgctggattcagaggaacacgtc
tgccccacttgtagccaatcaaatgtctctcctgataccctgatagccaataaatttctt
cgacaggctgtgaacaatttcaagaaagagcgaggcttcaccaaaggtctggcaagaagg
tgtggtacctcccagtcccaaaatccaaccccgacaccgagcccagtccccacaccgccc
ccacttatcttgcagagccagcctcagaagtcttaccaggcaacgtacagccagcaggac
tctctcctgcaccgcccacaggctgcagacacaccaccattatatggaaatcctcctgcg
gcaacaggccccgcctctgcttgcaacacgcctagcacttccctccagactgagcaaatc
tgcctggagatatctgacaagaaggctgaaggagagacatatgatgactcagctgctgcc
gctgctgctgctgctcctgctcctgctcctgctcctgccgctcctgctgctcctgctgct
cccgctgctgctgctgctgctgctgctgctgccccttctgtactggtttcaaacaaagag
cccagtgctcctccatcactggttaaccccacaacagtagcagagcagccccagacagtc
actgtgaatcaacagcagtccaccttaggtccagcaccaagacactcggggccatcaacc
tgctggggcagctcctcttcctcctccggttgtcccactggacgctggactgaatcccag
cagcttacttcctcctcttcctcgtcatattcagctaccactccaccgctctttccctcc
cccctttttcacacatacctcccaactcaacagtctcacagcagttaccctcctggatac
ccacctaccacgcccatctggacactcccatgcccccagggtgcccccatcccttccctc
tgctcctctgcctccacctcctccatccctgccctcatccccaaggagtggtacaggcat
cagagaaagaaggaaaggtcacctcacagaggatccacctacagacgctccacttctcgc
tctaactcaaagtcttctaagtccaagtcttctcgctcctactctcgctcttcaagcagg
tccagatcccgttcgcgatccagatcccaaggcagatcaagaccccgctcaccttactac
agagatgtccacacccgctctcatccctcccacgcctatagctacggctacaaacgctca
cgctcccctacaccgtcctcatcatcttcacctcaagtaggttaccattccaggtccaag
tcgccgtcagatcaccggaaaaaccgccaccacagccgccatcacaccaagaagtccact
tcgagcagctacagctccaggagacgaggagaatgcacagggagggaagcgggaggctct
ggggtgagtctagctggttccctgtatacccagcatgcgactcaaacaagcagtctggag
ctggataacagagagcgctacctgcagtggaaggaggagtacagagagtggtgtgagaaa
tatttcagcagctatgtcggccacttccaccagctgcctcttcccttcctcaatctccct
cctcctcctcagtgggaaggaagcaaaaatcactcacatgccaactcggaccctcgttac
caacacactgcccagacggatggccactcccctcaatcgcagtcgtccagtgacagccgc
tcccctccatctcagtcttcaagtgacagccgctccactccatctcagttgtctagtgac
agccgctcctctccgtctaatacgtccacagacagtcgttcccctccctctcagtcgtcc
agtgatggtcgctcgacaccatccgaagacagagctcggccgaaggcatatcaaaaacag
atggacagtcacctgccggttagacttacgaagagcagtaaggaggtggacctacaagaa
agaagtaaagacgacaaacgggtgatcattaaaaatttggacgacctcaatacctcaaaa
tatgagcaaaggaggaggaagaaacatgaggaaggaagaggagaggactcatcatcccct
gatagcagaaaggatgggagggggcacaacattggaccacatgcctgcaaggatggcacc
tcagtacgggacaaagcaactgccaacgataccataaaatcagcccaaccttctatgaaa
ccagataagtctttggataaagactgtgaaagaaagagcagagaacaaaggaatttggaa
cgagagaaagaatggagaagaggcaaagattcagactccaggcaagatgtggagagacgg
tgtaaaataaggccctgtaaagaggcagacagggtggtttcagacagatacagaaaccct
ggtggcagcaaagctcctgacattagatcggagaacagaaaaagaaaaggagagaacctg
gagagaaatgaaacctacaagagcaaatcccccagtcagtttgaaagaaagatgcaaaaa
acagaacagaaaatggagaggaaaacatggcctctgacaaagagcaacatttgggaagga
ggaataacagtgaaaccacagaagaaaataagcatcaatatcaacctggatgggaaaagg
aaggaggagaaaactgaaaaacaggagagtatggaaggaaaatcaaaggaagaaattgag
aagactggtgatggtgaagtggagaagttaaacagaggagacactgaggttgaagttaat
gagaataaggaatctagcagagaagaggaaggcgtgtttgaagaaaaaataaaaccagat
gatggagaggcaaggcagttatgggagaaagccaccttcagagatgacaagagagagatg
tgggagaaaattgcaggagagaaagaagacagagaaaagaaagaggacggagaagagaag
gactttgacttatggcattgtgcccttaaaggagtgaatgaggagaaggagtgtaaaaaa
cagtgggaggaaggagacgggatgaaggccagcaaaggagaagaggtgacaagagacgag
aggaggaacatgactggaaaagaggaggaagaagggagagtaagaaaagaaagtcaaggg
caagagatgggagagttggtccagattttccagaaggagagtgcagcgggagaaagcacc
tgcaaggaaaacagaggaaacctgcagggggagttgaagccaaaggaggcgctgatggag
gatgcgaagtggaggatgaggaaagaagaagacacgagcagcaacaagagccaccgtgac
agaccaaactccaacatggtggatggcagcggctgcgaggattgtcaggagaggacaaca
gtggttaaaactctggaggaatacaccgagcacagagccgcagagaaggaggatcatctc
gtactcatacaggtccctcgctccaaatgggagaaggaagagtctgaggaggaagagcag
aaggaaggagagattaaaaatcaagaccctcttcctgtggttctgcctccaccatttgtg
acaccaaccaacagggagacagagggagagaatgaaccaaagagacagaggtcagtggac
ataaagagagacagagaccgagtgatgcagagaggaagggacagggagaaagagaaaatc
tccactctgtccagttcagacagaagtgtggctccctctagtggcaaagacagaactgac
agcaccttatatacagacagccagagggagagaaggacagggatggagaggtggaaggac
aaagagagagggagggagagtgagaggccgagggatagacagaaagagagaagaagatcc
aaagagaggacaaaggaggaagagagagggagagacagggggagagagggggggtacagc
agcattgcctcggtccaaaagaagaatctcccttcctccagtcacttctcttactcgacg
tcacaggacttagagaggagagaccggcagcgaggaggcgaccaggaccacgagaagagt
tccaactcctcacgtcctggcgggaaactctctggcagtggaagcagggaaagaagctcg
ataagtagagctgccgaactgcctgataaacatgcacacaaaacgtatagagatacgtta
ccggactcgaaacgtaaagacaaaaaccatccccacgactaccataatcaccgagatcca
tcagggaactacaaacaccaagacagacctgcagggacccaccactcctcaccttccctc
ccccagagccagggtaaggagagagacccacacccctccgagtcctccagccctaagccc
agtaagcccagaatgagcagccctggtcgagagttaatgcagaaccaaaacagaaatgag
agcgaggaagagaagggggaatggaagagaaacaagngggataaagtgataaaagaaagc
aaaggggaaagagagaccgaagaaatggaggctaagagagaagtaggtagtgagtggcaa
gatcaggttgatgaactggctggagagaccaagtgggagggaggtagagagctggaggag
ggagagaggcccagcagccaaagccgcagcagcagcgtcagctcatcagcaagccaggag
aacagcaaggacgacaggaggaaagagagaaagaagaaacacaaaaaggagaagagccaa
gctaccccagagctgctggaggaaggggagctaaagaaacacaaacacaagaagaagaag
tcaaaaagaaacaaagacgggagggaggaggagagtggaggagagttggacgacaagtgg
aaagaggaagatgaacacgctaagctctgctcatttatgttatcttga
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integrated database retrieval system
