Xiphias gladius (swordfish): 120783622
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Entry
120783622 CDS
T07311
Symbol
rorc
Name
(RefSeq) nuclear receptor ROR-alpha A
KO
K08532
RAR-related orphan receptor alpha
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xgl03000
]
120783622 (rorc)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
xgl03310
]
120783622 (rorc)
Transcription factors [BR:
xgl03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
120783622 (rorc)
Nuclear receptors [BR:
xgl03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
120783622 (rorc)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
120783622
NCBI-ProteinID:
XP_039972644
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Position
LG22:17089200..17108170
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AA seq
505 aa
AA seq
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MEYEEPDVPPADTPIKRGGSLSKKTHLTQIEVIPCKICGDKSSGVHYGVITCEGCKGFFR
RSQLPTVSYSCSRQSNCQIDRASRNRCQHCRLQKCLAQGMSRDAVKFGRMSKRQRDSLIA
EVERHRQQQQQQQQLQAGAQSVLSYPTKPRQDRSPQLLQPIASAYSFTGEAELLSYTTDV
HPFLACSPNESQVSGMIYRGSSVSPTSRSQGRGDDSGHPDIRGFDSRQPSHDLMAIHSYN
PLEDPYSIYPHSLRNIDEVCASIVRSHRETSQYRVEELQALRWKLFSREETQAYQSKSVD
EMWQHCAIRLTDAVQYVVEFAKHIPGFRMLSQNDQIALLKTGSMEVVLVRMSRFFNKENN
TVFFDGKFAGVEVFKSLACGDLIAAVFDFAHDMCALKLTEQQIALFSALVLINADRPSLE
DRSRVQRVQRSVELGLMHILHRDNHDSLMHKLYQRMAVLRSLCSLHMEKLRWFSQRYPLS
AHSLFPPLYRELFGSEAELLPGATH
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggaatatgaagagcccgacgtgccccccgctgacacccccatcaaaagaggaggatcc
ctgtccaagaagactcatttgacccagattgaagttatcccgtgtaagatctgtggtgat
aaatcctctggagtacattatggagtcatcacttgcgagggctgcaaggggtttttccgg
cgcagccagctgcccactgtatcctactcctgctccaggcagagtaactgtcagattgac
cgggccagccgcaaccgctgccaacactgccgtctgcagaagtgcttggcacaaggcatg
agcagagatgctgtgaagtttggacggatgtccaaacgccagcgggattctctaatcgct
gaagtggaaaggcaccgacaacagcagcagcaacagcagcagcttcaggcaggcgcccag
tctgtgttgtcctaccccaccaagccccgacaagaccgctccccccagctccttcagccc
atagcttcagcctactccttcactggtgaggctgagctgctgtcctacaccactgatgtt
caccctttccttgcgtgctccccgaacgagtcgcaggtgtcagggatgatctaccgaggc
tccagtgtgtctcccacatcaagatcccaggggaggggtgacgacagcggacaccctgac
ataagaggatttgactccagacagccatctcatgatctgatggcgattcattcctacaac
cctctggaggacccttacagcatttatcctcattctctgcgaaatatagacgaggtgtgc
gccagcattgtgcgttcccacagagagacaagccagtacagagtggaggagctgcaggct
ctcagatggaaactgttcagcagagaggagacgcaagcctaccagagcaaatcagtggat
gagatgtggcagcactgtgctattcgactgactgatgccgtgcagtatgtggtggagttt
gccaaacacatcccaggtttccgtatgctcagccagaacgaccaaattgcgcttctcaaa
acaggctcaatggaggtggttctggtcaggatgagtcgtttcttcaacaaagagaacaac
actgtcttctttgacgggaaatttgctggagttgaagtcttcaagtctttggcatgtggt
gatttgatcgcagcagtgtttgactttgctcatgatatgtgtgctctaaaactcactgag
cagcagatcgctctcttcagtgctctggtgctgatcaatgcagaccgtccatctctggag
gataggagtagggttcagcgggtgcaaagaagcgtggagttaggactcatgcacattcta
catcgagacaaccatgacagtctaatgcacaagctgtaccagaggatggcagtgttgcgc
tcgctgtgcagtcttcacatggagaagcttcgctggttcagtcagcgttaccctctcagt
gctcactctctgttccctccactctacagggagctgtttggctctgaggcagagctgctg
ccgggggccactcactga
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