Xiphias gladius (swordfish): 120783918
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Entry
120783918 CDS
T07311
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120783918 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xgl03021
]
120783918 (smarcc1a)
03036 Chromosome and associated proteins [BR:
xgl03036
]
120783918 (smarcc1a)
Transcription machinery [BR:
xgl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120783918 (smarcc1a)
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120783918 (smarcc1a)
PBAF complex
120783918 (smarcc1a)
GBAF(ncBAF) complex
120783918 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT_2
BRCT
DUF919
Motif
Other DBs
NCBI-GeneID:
120783918
NCBI-ProteinID:
XP_039973256
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All DBs
Position
LG22:26422875..26453341
Genome browser
AA seq
1134 aa
AA seq
DB search
MATAATTAGGTGSGGPATGLVGGGTAVGRKKDGGPSTKFWESSETISQLETVRLWIGKHY
KKYVQNDSPSCKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFMDFKAGGALCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIEQKPASK
LKDIIKRHQGSITDDKSKATHHIYPSPSQQEEDEWLRPVIRKEKQVLVHWGLYPDSYDTW
VSASEVDGDVEDPPSTDRPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKPVSFRQRIFPK
EEESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHRGEEED
TEEDMTKDMDDSSAGASMEEGSMSKNTSSKKDNDNTPVKGGNVADLDDMEDDSVLSGGKD
DEEQGKAEINRLIDAGEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSK
TPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDAD
SRPLPMGPPPTPHFTVLADTPSGLMPLNHRAPPIPPPQQMPNFADKGKDKPIDLHNFGLR
TDLYKKNPKGKAVNSTREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL
PIEDPYLESTEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSR
VREEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTETTEPEKMDTD
TDSQQADKAELKDEAEKPSESAEKSDKTDATEKVKKEGTEASEREEEAEEGGEAKTAPTD
KDKEEAMETSSSEQEKDKEEKAATEEGEDKRKKLEHDIGEGNIATAAAAALASAATKAKH
LAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFH
MEQLKYAEMKARQQMEQQAAAAAAAAAAQAQGQGQAPGSGPHSGPPQPGMHPGGPPPLHG
GPPPHHGAPPPHHGGPPPGAAMHPGYPPMGHHPMAPHHPGQTGPMGPGQPMPGRMMPGPP
SAGPPPGGMPPMMPPRHPGAPNGMYPGPAPAQPEAMPPAPVGPAAPPSGRVADN
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaactgcagggggaacgggctcaggcggaccggccaccggcctg
gtgggcggcggaaccgcagtgggacggaaaaaggacggcggcccatccacgaaattctgg
gaaagttcagagacgatatcccagctagagacggtgcggctgtggatcggaaagcactac
aagaagtatgtccagaatgactccccctcctgtaaatccttggcgggcctggttgtccag
ctgctgcagttccaggaggatgcatttggacgccgggtcaacaatcctgctcttaccaag
ctacctgccaagtgtttcatggatttcaaggcaggaggtgctctctgtcacatcttgggg
tcggtctacaagtttaagagcgagcagggctggcgtcgatttgacctgcagaatccttcc
cgtatggacaggaatgtggaaatgtttttaaatgttgagaagaacttggtccagaataac
tgcttgactcgacccactgtcttcttgtcaccggacatcgagcagaaaccggccagtaag
ctcaaagacatcatcaaaaggcaccagggctccattactgatgataagtcgaaggccacc
caccacatctacccctccccgtcccaacaagaagaagatgagtggctccgtcctgtcata
aggaaagagaagcaggtgctggtgcactggggtctctacccagacagctatgatacctgg
gtgtcagccagcgaggtggatggtgacgtggaggatcctcccagcactgacaggccctgg
aaggtccatgccaagtgggttttagacacagatgccttcaatgagtggatgaatgaagaa
gactacgaggtagacgagaacaagaagccagtcagcttccgccagaggatcttccccaag
gaggaggagtcttcccgtacacccgatcgaaaggagcgcaaggccaactccgccggcaag
aagaggaggcgctcaccctcgccgcccagcacccctgccgagtcccgcaagaagggagga
aagaaggggaaccctgggcctcactggaagcgacggggccacagaggcgaagaggaggac
acggaggaggacatgaccaaagacatggacgactcatcggctggtgccagcatggaggaa
ggcagcatgtccaagaatacaagttcaaagaaggacaatgacaatactccggtgaaagga
gggaatgtggctgacttggatgacatggaggatgactctgtgctgtctggtggaaaggat
gacgaggagcagggcaaagcggaaatcaaccggctgatagacgccggcgaggacaacgtg
actgaacagactcatcacatcatcatccccagctacgctgcttggttcgactacaactgc
atccatgagattgagagacgagccttgcccgagttcttcaatggaaaaaacaagtctaaa
actccagagatatacctggcctaccgtaacttcatgatcgacacgtatcggctaaaccct
caggagtatcttacctccacctcctgccgcaggaacttgaccggggatgtctgcgccatc
atgagggttcatgcgttcttggagcagtggggtttggtgaactaccaggtcgacgccgac
agtcgcccgttgcccatgggccccccacctacgccccatttcactgtgctggctgacacg
ccctctggcctcatgcccttgaaccaccgagccccaccaattccccctccacagcaaatg
cccaactttgcagacaaaggcaaagacaagccaattgacctgcataactttggccttcgc
accgacctctacaagaaaaaccccaagggtaaagcagttaactccaccagggaatggacc
gagcaggagactctactcctgctagaggccctggagatgtacaaagacgactggaacaaa
gtgtcggagcatgtcggttcgcgcacccaggatgagtgtatactgcacttcctgcggctg
cccatcgaggatccatacctggagagcactgaggcctctctgggccctctggcctaccag
cccatacccttcagccagtctggaaaccccgtcatgagcacagtagccttcctggcctct
gtggttgaccccagagtggcgtctgctgctgccaaggcagccctagaggagttttcccgt
gtgcgtgaggaggtgccagctgagctggtggaggctcatgtgaagaaggtgcaggaggca
gccaggagcacaggaaaggtggaccccgccttcggcctggagagcagcggcatcgctggc
accgcacctgaggagccagaaaagaccgaaaccacagagccagaaaagatggacactgac
acagactcccagcaagccgataaggcggagttgaaggacgaggcagagaagcccagtgag
tctgcagaaaagagcgacaagacagacgccacagaaaaggtgaagaaggaaggaacggaa
gcgtcggagcgtgaggaggaggcagaggaaggaggggaggccaagacagccccgacagac
aaagacaaggaggaggctatggagacatcgtcgtcggagcaggagaaggataaggaggag
aaagcggctacagaggagggagaggacaaaaggaagaagctggagcatgacattggagag
ggaaatatcgctaccgcggccgctgctgctctggcatctgctgccaccaaggccaagcac
ttggcagcagtggaggagaggaagatcaagtccttggtcgctctgctggtggagacccag
atgaagaagctggagatcaagttgaggcacttcgaggagctcgagaccatcatggaccga
gagaaagaagccttggagcttcagcggcagcagctgctcaccgagcgtcaggcgttccac
atggagcagctcaaatatgccgagatgaaggcgaggcagcagatggagcagcaagcggct
gccgccgctgctgctgcagccgcccaggcccaaggacagggacaggcccctggatctgga
ccccattcagggccccctcaaccaggcatgcaccctggaggacccccaccactccacgga
ggaccaccccctcaccacggagcaccaccaccccaccacggagggccaccaccaggtgct
gccatgcaccccggctatcccccaatgggtcaccacccgatggcccctcaccacccagga
cagacaggaccaatgggaccaggccagccgatgcctggacgtatgatgcccggccccccc
tctgctggcccccctcctggcggcatgcctcccatgatgcccccacgccaccctggagct
cccaacggcatgtatcctggcccagcacctgcgcagcctgaagcgatgcctccagctccc
gtgggtcctgcagcacccccaagtggacgagtggctgacaactaa
DBGET
integrated database retrieval system
