Xiphias gladius (swordfish): 120784516
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Entry
120784516 CDS
T07311
Name
(RefSeq) retinoic acid receptor RXR-beta-A-like isoform X1
KO
K08524
retinoid X receptor alpha
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03320
PPAR signaling pathway
xgl04148
Efferocytosis
xgl04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120784516
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
120784516
03320 PPAR signaling pathway
120784516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xgl03000
]
120784516
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
xgl03310
]
120784516
Transcription factors [BR:
xgl03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
120784516
Nuclear receptors [BR:
xgl03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
120784516
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Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
120784516
NCBI-ProteinID:
XP_039974314
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Position
LG22:14909635..14919532
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AA seq
444 aa
AA seq
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MSSQQPNSSASNSPTTILGSPFSVISPSLNSTVVSPSLGFGPISNSQISSSAPISGMHSI
SSSEDIKPPFGLRPMPAHSPGIMLSQKRLCVICGDRSSGKHYGVYSCEGCKGFFKRTVRK
DLSYTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREVIKHVKWIKEDGKDEGWMTVQE
ERQRNREREGELEFSVGVNEEMPVEKILEAETAVEQKTELHSDGGSAGNSPHDAVTNICQ
TADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIALKDGVLLASEL
QRDSTHSAGVGAIFDRESVQSAEVGAIFDRVLTELVNKMRDMAMDKTELGCLRAIVLFNP
DAKGLSNTSEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF
FKLIGDTPIDTFLMEMLEAPHQLS
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcacagcagcccaacagctcagcctccaacagccccaccaccatcttgggttct
cctttctcagtgatcagtccctcacttaactccacagttgtctcaccctctctgggattt
ggacccatcagcaacagtcagatctcatcctcagcacccatatcagggatgcactcgatc
agcagctcagaggatatcaagcctccatttggcctgaggcccatgccagctcacagccct
ggaataatgttgtctcagaaacgcctgtgtgtcatctgtggagaccgctcttctggaaaa
cattatggagtgtacagctgtgagggttgcaaaggcttcttcaaacgaactgtgcgcaaa
gacctgagctacacctgcagggataacaaagaatgcctggtcgacaaacgccagcgcaat
cgctgccagtactgccgctaccagaagtgcctggccatgggcatgaagagggaagtgatc
aaacatgtaaagtggataaaagaagatggaaaagatgagggatggatgacggtccaggag
gagcgccagaggaaccgagagcgtgaaggagagctggagttcagtgttggagtgaatgag
gagatgcctgtggagaagattttggaggcagagacagcagtggagcagaagactgagctt
cattctgatggaggctctgcaggcaactctccccatgatgcagttaccaacatctgtcag
actgcagacaaacaactgtttgccttggtggagtgggcaaagagaatcccgcatttctcc
gaactgccccttgatgaccaggtcatccttctgcgtgcagggtggaatgagctcctcatt
gcctcgttctcccatcgctccattgctttgaaggatggagttctcctggcatctgagctg
cagcgcgacagtacacacagtgcaggagttggagccatttttgacagggagagtgtgcag
agtgcagaggtcggcgccatatttgacagggttcttactgagctcgtcaataaaatgaga
gatatggcaatggacaaaacagagctgggctgcctccgagccatcgtcctcttcaaccca
gatgctaaagggctctccaacaccagtgaggtggagctactgagagaaaaggtctatgca
tcattggaagcctactgcaaacagaaatacccagagcagcagggaaggtttgctaagctg
cttcttcgactgccagcactgcgatccattggcttgaagtgcttggagcatctcttcttc
tttaagctgatcggtgacacacctattgacactttcctcatggaaatgcttgaagctccc
catcagttgtcttag
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