Xiphias gladius (swordfish): 120785327
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Entry
120785327 CDS
T07311
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120785327 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xgl03021
]
120785327 (polr1a)
Enzymes [BR:
xgl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120785327 (polr1a)
Transcription machinery [BR:
xgl03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
120785327 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Nop14
HMG_box
CDC45
Pox_C7_F8A
Motif
Other DBs
NCBI-GeneID:
120785327
NCBI-ProteinID:
XP_039975895
LinkDB
All DBs
Position
LG23:24224440..24254354
Genome browser
AA seq
1692 aa
AA seq
DB search
MLFGKEVPWRRLEGMSFGMYSAEEIRKLSVKAITNFRFLDGVGNVAPNSLYDLALGPADN
KEVCSTCCQDFNKCPGHLGHVELPLPVYNPLFFDKLYLLIRGSCMACHMLTCPRAAIHLL
LNQLKLVDHGAMQGVYQIEQVLSQHLEENPKAAGDEIEQVLKEFTDTVLGVNAEGSEDTK
PIKHLIEKKSSLINDFWKIHMKTRKCPLCRSGRFTVRREHNSKLIVTMPSGAQTSDNTDD
LMAGKRVYLTASTAREHTNKLWEKEGFFLKCLFSGLEEGTGSKEGEKAFHPDLFFLELLV
VPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGIIRKLLALIGGEKNTQEEEAPEQTDQS
FLAGIPGQTLTDKLYNIWIRLQTHVNIVFDSDMDKMMTEKYPGIRQILEKKEGLFRKHMM
GKRVDYAARSVICPDMYIGTNEIGIPTVFATKLTYPQPVTPWNVKELRQAVLNGPNVHPG
ASMVINEDGRRTILSATSLVQREAVAKQLLTPCPGPHKMPMKIVNRHIKNGDVLLLNRQP
TLHRPSIQAHSARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVST
DQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRDQYTELVYRGLTDKHGRVKLLPPA
ILRPQQLWTGKQVVSTLLLNVIPQKAVPLNLVGKSKIPSKAWIQVPPRAAPGYRPDSMCD
SQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGATSGKLLSCLAQLFTAYLQLYRG
FTLGVEDILVKPGANRQRKKIIKESLKIGTKALQAAFNLPSNVDQAEAQSRWQDAHLNPD
QRDFSMADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQISC
LLGQIELEGRRPPLMPSGKFLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFHCMAGREG
LVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQP
RQFPFIEENYEVIQRSQGLDKVLARLDPQTASQHFAAIQRWKAKRDVASPRRGAFLLFSQ
KKLAKLKQTEQPTEPAASGRNAATLQLAQQWYTLDEASRSKYSRKSSRCPEPSLGLFRPD
VCFGSVSENFHDITEKYLQNRGRMSQATLDTHSLRQLLHYKWQRSLCDPGEAVGLLAAQS
IGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNNKKALKRA
KILRKKLTRVCLAEVLQKVDVVESLQIDNHQKLRLFKVAFHFLPPDRYCDDKLLSPQQIL
HYMETRFFRLLLEAIKKRSAKLASIAVETRKATPRDKDLDGDGTTDTAGLDDGEGEEGRE
IVDDQGNEGDADASDAKRKGKQEEEVDYESEEEEGGDDAEDKEDQGEEEEEESEENTTQE
ESPPESAGVRLERKKTGAKRRGAKGDDTISQMRVNSVLESNPAIQRYRYDHQHELWCEVD
LVLPVSKVHFDLTSVLSTLAQNAVIMETKGLTRGLLSETTTKTGEKETILNTEGINMHEM
FKYSNILDINRLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYM
CFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKVVKG
GTGLFELKQPLQ
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttggaaaagaagtgccatggcggcgtttggagggcatgtcgttcggcatgtac
tccgctgaagagataaggaaattgagcgtgaaggcgatcactaacttcaggttcctcgat
ggagttgggaatgtggccccaaacagtctgtacgatctggccctgggaccagcagacaac
aaagaggtgtgttcaacctgctgtcaggacttcaacaagtgtccggggcacctgggacac
gtggagctgcctctacctgtgtacaacccactgttctttgataaactctacctgttgatt
cgtggttcctgcatggcgtgccacatgttaacgtgtccccgagctgccatccacctgctg
ctgaaccagctgaagttagtggaccatggagccatgcagggggtctaccaaatagagcag
gttctcagccagcacctggaggagaatcccaaagcagcgggagatgagattgagcaggtg
cttaaggagtttactgacacagtacttggagtgaacgccgaaggttcagaggacaccaaa
ccaattaaacacctcattgaaaagaagagcagtctgataaatgacttctggaagatccac
atgaaaactaggaaatgtccattgtgcaggagtggcaggttcacagtgcgtcgtgagcac
aacagcaagctgattgtcacgatgccgtcaggagcacagaccagtgacaatactgatgat
ctgatggctggaaagagagtctacctgaccgctagtactgccagagaacacaccaacaaa
ctgtgggagaaagaaggtttcttcctgaagtgtctgttctctgggctggaggagggcacg
ggatcaaaggagggagagaaagccttccatcctgacctcttcttcctggagctgctggtg
gtcccaccttgcaggtatcgtccaatcaatcgactgggtgaccagatgttcaccaacggc
cagacagtcaacatgcaggctgtcatgaaggactgtggaatcataaggaaacttctggct
ctcataggcggggaaaaaaatactcaggaagaagaggctcctgaacagacagaccagtcg
tttctggccgggatccctggacagacattaacagacaaactctacaatatctggatccga
ctacagacccacgtcaacatcgtctttgacagtgacatggacaaaatgatgacagagaaa
taccctggaatcagacagatcttggagaagaaggagggattgttccggaaacatatgatg
ggcaaacgagtggactacgctgcacgatctgtcatctgtccagacatgtacatagggacc
aacgagataggaatacctacggtgtttgccaccaagctgacctaccctcagcccgtcact
ccatggaatgtgaaggagcttcgtcaggccgtccttaacgggcctaacgtccaccccggc
gcttccatggtgataaacgaggatggcaggagaaccatcttatcagctaccagccttgtt
cagagagaagcggttgccaaacaactgctgacgccctgtcctggtccacataagatgcca
atgaagatagtgaatcgtcatataaagaacggagacgttttgttactaaacagacaacca
actctgcacagaccctccatacaagcccactctgcccgcatcctaccaggagagaaggta
ttaaggctccactatgccaactgcaaggcgtacaatgctgactttgatggagacgagatg
aatgctcacttccctcagagtgagctgggcagagcggaggcctacacgttagtcagcact
gaccagcagtacctcgtccccaaggatggtaaacctttagcaggtctgatccaggaccac
atggtgtcaggaacgagaatgacgatacgaggctgtttcttcacccgagaccagtacacc
gagttggtgtacagaggactgactgacaaacacggcagagttaaactgctgccgccggcc
atactcagaccacagcagctatggacaggaaagcaggtggtgtctacgctcctgctgaat
gtaatcccacagaaagctgtgcctctcaacctggttggaaaatcaaaaatcccaagcaag
gcgtggatccaagtcccaccacgtgctgctccgggatataggccggacagcatgtgtgac
tcacaggtggtgattcgtcagggcgagctgttggtgggggttctggacaaggctcactac
ggctcctcagcctatggtctggtccactgctgctatgagctgtacggaggggcgaccagt
ggcaaactgctcagctgcctggctcaactcttcactgcctacctgcagctatacagaggc
tttactctgggtgtggaggacatcctagtgaaaccgggcgccaataggcagaggaaaaaa
atcattaaagaatcactaaagattggcaccaaagctcttcaggcagccttcaacctgccc
tccaacgtggatcaagctgaggctcagagccgctggcaggacgctcacctcaacccagac
cagagagacttcagcatggctgaccacaagttcaaagaagtggccaaccaagtgaacaat
gatatcaacaaggtgtgtatgccagttggactacacacttctttcccagacaacaacctt
caattgatggtccaatcaggagccaaaggatctactgttaacaccatgcagatttcgtgt
ctactaggccagatcgagttggagggccgtaggcctccactaatgccctctgggaaattc
ttgccatgcttccaaccatatgaccctgcacctggtgctgggggctttgtctcaggaaga
ttcctcacaggcatcaaaccacaggagtttttcttccactgtatggctggcagagaagga
ctggtcgacacagctgtgaaaacctcgagatccggatacctgcaaagatgtgtcataaag
catctggagggtttggtagtgcagtacgatctaacggtgagggacagtgatggatctgtg
gtccagttcctgtacggtgaagatgggctggatatccccaagactcagtttctgcagcca
agacagttcccgttcatagaggaaaactatgaggtcatccagaggtcccagggcctggac
aaggttttggcacgtttggaccctcagactgccagtcagcactttgcagccattcagcgc
tggaaagcaaagagagatgtggcaagtccacggagaggagccttcctgttgttttcccag
aagaagttagccaaactaaaacagactgagcaaccaacagagccagctgccagtggcaga
aatgctgctacactgcagctggcacagcagtggtacactctggatgaagctagcagatcc
aaatacagcaggaagtcctcccgctgccctgagccctcgctgggcttgtttaggccagac
gtctgctttgggtcagtgtctgaaaacttccacgacatcacagagaaatatctgcagaac
agaggcaggatgagtcaagcaacactcgacacccacagcctccgccagctgttgcactat
aaatggcagcgttcactgtgtgatccaggtgaagcggtgggtctgctggcggctcagtcc
ataggcgagccctccacccagatgaccctcaacaccttccactttgctggcagaggagag
atgaatgtcactttgggaatacctcgactaagagagatcctaatggtggccagctccaac
attaaaactcccatgatgagtgttccggtactgaacaacaagaaagccttgaagagggcc
aagattctccgtaagaaactcacaagggtgtgtctggctgaggtcctgcagaaagtggat
gtagtagagtcactacagatcgacaatcaccaaaagctgcggttgttcaaagtcgccttc
cacttcctgcctcctgaccgttactgtgatgataagctgctgtcgccccaacagatcctc
cactacatggaaacgaggtttttccgtctgctcctcgaagccattaagaagcgcagcgcc
aaactggcctccattgccgtggaaacgagaaaggccactcccagagataaagacctcgat
ggcgatggaacgactgacacagcagggttagatgacggcgagggagaagaggggagagag
attgttgatgaccaggggaacgaaggagatgctgatgcttcagacgccaagagaaaaggc
aaacaggaagaggaggtggactatgagagcgaggaggaggagggaggtgatgacgccgaa
gacaaagaagaccagggcgaggaagaggaggaggagagtgaggagaacaccacccaggaa
gagtccccgccagagtctgcaggagtgagactggagcggaagaagacaggagcaaaaaga
aggggagcaaaaggagacgataccattagtcagatgagagtcaattctgttctggagtcc
aacccggcaatacagagataccgctatgatcaccagcatgaactctggtgtgaggttgac
ctggtcttgccggtcagcaaggtgcactttgacctgacctcagtcctgtccacactggcc
cagaatgctgtcatcatggaaaccaagggcctgactcgcggcctgctgagtgaaactaca
acaaagaccggagaaaaagagacaattctcaacacagagggcatcaacatgcatgaaatg
ttcaagtacagtaatatcttggacatcaaccggctgtactccaatgaagtccatgccatg
gctaacacctatggtattgaagtggctctgaaggtcatagagaaggagatcaaagatgtc
tttgctgtctatggtatcgaggttgaccccagacatctgtctctggtagcggactacatg
tgttttgaaggcgtttataagcccttaaaccggcacgccatccggtccaactcctccccc
ctgcagcagatgacctttgagaccagttacaaattcctcaaacaggctaccatgctgggg
tcacatgatcagctggtgtcaccctcagcctgcctggtggtggggaaggtagtcaaaggg
ggaacgggactgtttgaactgaaacaacctctgcagtag
DBGET
integrated database retrieval system
