Xiphias gladius (swordfish): 120786051
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Entry
120786051 CDS
T07311
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120786051 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xgl03021
]
120786051 (smarcc1b)
03036 Chromosome and associated proteins [BR:
xgl03036
]
120786051 (smarcc1b)
Transcription machinery [BR:
xgl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120786051 (smarcc1b)
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120786051 (smarcc1b)
PBAF complex
120786051 (smarcc1b)
GBAF(ncBAF) complex
120786051 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
SpeFL
Motif
Other DBs
NCBI-GeneID:
120786051
NCBI-ProteinID:
XP_039977046
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All DBs
Position
LG24:11460422..11469358
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AA seq
952 aa
AA seq
DB search
MATMSGGTNLGIPGTSQTSSATAAYRKKDSSPSTRFWESPDTLAQLEVVRQWIGKHYKKF
VLVDAPSCQVLAAVTLQLLQFQEDAFGRQATSPSLTKLPAKCFLDLRPGGGLCHILGTAY
KFKAEQGWRRFDLQNPSRTERNVEMFETIEGALIQNNCISLPVVYLDPALDKELAGRLTD
IITKHRGTLTEDRTLASHHISPSPASTEEDEWMRPVMQKDKHVLVHWGMHPDSYDSWLSS
SDVEGEVEDPPHPERPWRVHTGWVLDTDVFNEWMNEEDYCVDERNVPIILRQRIHLQDDQ
DSKSSPSKKRRRSPSPPSSEGRKKGKKGRRRGQQEEEPEEDLTKDMEDPTPVPNMEEVIL
PKNVNLKKDSENTPVKGGTMADLDEQEDDFPGREDEEGRGELPRLSEGEDNITEQTHHII
IPSYTSWFNYNSTHLIEKRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLSSTS
CRRNLTGDVCAVMRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQ
HKPLQVAASQHMLYFPEKSREKPSDCQNFGLRTDIYAKKHPKTKGASAGREWTEQETLLL
LEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQS
ENPVMSTVAFLASVVDPRVASAAAKAALEEFSRVQEDSVDKVSEMSNQPDKIESMDTEKL
ETNSTSHQVPGRADGLKVEPSGAKVEGDQVKRENAENILAEERDERGDDDESVGRREGDG
DEGRRVMEQEQVEGSVATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIK
LRHFEELETIMDREKEALEQQRQQLLSERQTFHTEQLKQAEMKVRQQREQQGHSGYTMQH
SGPSMPNRIMTSGGNAQPMAPRHPGAPNGMYPSSQPDGIAPAQPGPPASTHS
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggccacaatgtccggaggaacaaatctcgggattcccgggacgagccagaccagctcc
gcaacggctgcgtatcggaaaaaagacagcagtccgtccaccaggttctgggagagtccg
gatactttagcccagctggaggtggtgcgacagtggatcgggaagcactacaaaaagttt
gtgttggtggatgctccatcatgccaggtcctggctgcagtcaccttacagctgctccag
tttcaggaggatgcctttggccgacaagctaccagtccttctctcaccaaactgcctgca
aagtgcttcctggacttgcgaccagggggtggactctgccacattcttggcactgcctac
aagttcaaggctgagcaaggctggcgaaggtttgacttgcagaatccatcaagaactgag
aggaatgtggagatgtttgaaacaattgaaggggcactgatccagaacaactgtatatca
ctgcctgtcgtatatctggaccccgcacttgataaggagctggcaggaagactgacagat
atcatcaccaagcaccggggtacgctcactgaggaccgaacgcttgccagtcaccacatc
tccccctcacctgcttctacagaggaagatgaatggatgcgtcctgtcatgcaaaaagac
aaacatgtattggtacattggggcatgcaccccgacagttatgacagctggctgtcctca
agtgatgttgaaggagaggttgaagatccaccacatcctgagaggccctggagggtccat
actggttgggttctggacacagacgttttcaatgagtggatgaacgaggaagactattgt
gtggatgagaggaatgtaccgataatcctccgccagcgtattcacctccaagacgaccag
gactcaaagtccagcccatccaaaaagagaagacgatccccatctcctccctcctctgaa
ggcaggaagaaaggaaagaaggggagaaggcgtggacaacaggaggaagagccagaagag
gacctgaccaaagacatggaggaccctacccctgttcctaacatggaggaggtcatactg
cccaagaatgtcaacctgaagaaagacagtgagaatactcctgtcaaaggaggcactatg
gctgacctggatgaacaggaggatgattttccaggaagggaggatgaagagggaagagga
gagctgccacgcttatcagagggagaggacaatatcacagaacaaacccatcacattata
ataccaagctacacatcttggttcaattacaacagcactcacttaatagagaaacgtgca
ctgcctgaattctttaatgggaagaacaagtccaaatctccagaaatctacctggcatac
cgcaacttcatgattgacacataccggctcaacccccaggaatacctcagttcaacgtcc
tgcagacgcaacctcactggagacgtctgtgctgtcatgagggttcatgcatttttggag
cagtggggtttgattaactaccaagtggatgcagagagcagacccctccccatgggaccc
ccacccacccctcatttcaacgtactggctgacacaccatccgggctggcccccctacaa
cacaaacccctgcaggtggccgcctcacagcacatgttgtatttcccagaaaagagcaga
gagaagccttcagactgccagaactttggtctgcgcaccgacatctacgccaagaaacac
ccgaagactaaaggagcaagtgcaggaagggaatggacagagcaagagacacttttgcta
ttagaggccttagaggtttacagagatgactggaacaaagtatcagagcatgtgggctcc
agaacacaggacgagtgtatcctccacttcctccggctgccgatagaggacccttatcta
gaagactcctcggcctctcttggtccactggcttaccagcctgtgcctttcagccaatca
gagaaccccgttatgagcactgtggccttcctggcatctgtggtggacccacgggtggca
tcggctgcagctaaggccgcactggaggagttttctcgagtgcaggaggactcagtggat
aaggtctctgaaatgtccaaccagcctgataaaatagaatcaatggatacagaaaaattg
gagacaaactccacctcccatcaggtccctggaagggcagatgggctcaaggtggaaccc
agtggggcgaaagtggagggagatcaagtcaaaagggaaaatgcagaaaacatacttgca
gaggagagagatgaaagaggagatgacgatgagagtgtagggcggcgagagggagacggg
gacgaggggaggagagtgatggagcaggaacaggtggagggcagcgttgccacggcagca
gcagcagctctggcctcagctgccacaaaagccaagcacttggcagcagtagaagagagg
aagatcaagtccttggtggctctgctggtggagactcagatgaaaaagctggagatcaag
ctgagacactttgaggagctggagaccatcatggaccgtgagaaagaggctctggagcag
cagcggcagcagcttctatcagagagacagacgttccataccgagcagctcaaacaggca
gagatgaaggtccgccagcagagggagcagcaggggcactcgggatacacaatgcagcat
tcaggcccgtccatgccaaaccggataatgactagtggaggcaatgcccagccgatggcc
ccccggcaccctggagctcctaatggcatgtacccatcctcacagcctgatgggatcgca
ccagctcagcccggtcctccagcatcaactcacagctga
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