KEGG   Xiphias gladius (swordfish): 120786055
Entry
120786055         CDS       T07311                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
xgl  Xiphias gladius (swordfish)
Pathway
xgl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xgl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120786055 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xgl03041]
    120786055 (snrnp40)
Spliceosome [BR:xgl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    120786055 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    120786055 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C NBCH_WD40 Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_IFT140_2nd WDR54 Beta-prop_Nup120_160 Beta-prop_VPS8 WD40_like
Other DBs
NCBI-GeneID: 120786055
NCBI-ProteinID: XP_039977058
LinkDB
Position
LG24:complement(12336865..12344299)
AA seq 347 aa
MIEPKKRVADMAVVPAAVKRPRTELVAAAQSQQLVAMGPPRSSSLQAPIMLMSGHEGEVY
CCKFHPNGATLASSGFDRLILLWNVYGDCENYATLKGHSGAVMELHYNTDGSVLFSASTD
KTVGVWDSETGERIKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTVKLWDIRKKGAIHTF
QNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSVTGLALSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVVFHPEEPIVLSGSSDKRLYIGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgattgaacctaagaagagagtggcggacatggcggtggttcctgccgccgtgaagcgg
cctcggacggagctggtggcggcggctcagtctcagcaactcgtggcgatgggcccccca
cgaagctccagcctgcaggctcccatcatgctgatgtctggccacgagggcgaggtctac
tgctgcaaatttcatcccaatggagccacgctggcctcctcaggatttgacaggctcata
ttgctgtggaatgtgtacggagattgtgaaaattatgccactctaaagggccacagtgga
gcagtgatggagctgcactacaacacagatggcagcgtgctgttttcagccagcacagac
aagactgtaggtgtgtgggacagtgaaacgggcgagaggatcaagcgtctgaagggccac
acctcctttgtgaacacctgctacccggcccgccgagggccccagcttgtctgcaccggc
agcgacgatgggacggtcaagctatgggacattcgtaagaagggggcgatccacactttc
cagaacacctatcaggtgctggccgtcaccttcaacgacacaagtgatcagatcctgtca
ggaggcatcgataatgacatcaaggtgtgggacctgaggcagaacaagctgatttacaat
atgcatggccatggtgactcagtaactggacttgcactgagctcagagggatcatacctc
ctctcaaactccatggacaacacagtgcgtatttgggatgttcgaccatttgcgccaaag
gagagatgtgtgaagattttccagggcaatgttcacaactttgaaaagaatttgctgagg
tgctcctggtctactgatggcagtaagatagctgcaggctcagctgacagatttgtgtat
atttgggacaccacatcacgtagaattctgtacaagctgccgggccacgctggctctgtc
aatgaagtggtcttccacccagaggagcctatagtgctgtctggctccagtgataaacgg
ctctacatcggagaaattcagtag

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