Xiphias gladius (swordfish): 120786139
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Entry
120786139 CDS
T07311
Symbol
trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120786139 (trim71)
04121 Ubiquitin system [BR:
xgl04121
]
120786139 (trim71)
Enzymes [BR:
xgl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120786139 (trim71)
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120786139 (trim71)
Ubiquitin system [BR:
xgl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120786139 (trim71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
TEN_NHL
zf-RING_5
zf-C3HC4
zf-RING_2
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
120786139
NCBI-ProteinID:
XP_039977256
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Position
LG24:7563902..7621551
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AA seq
830 aa
AA seq
DB search
MASFPDSDLQTCPLCKELCGSSAPISSSSSTSSSSSHTSSSSSQTTRRLHVLPCLHAFCR
QCLEGQRSPGDPLKLRCPTCDQKVSISEAGVDSLPSSNFLFSNLLDVVVSSEEQIQNKNG
HHHRGGLGGGSSGFHHPHGGLLHPHHLGEPQCSSCDEENPATSHCLDCQEYLCDNCVRAH
QRVRLTKDHFIECLGENLHLGRVNANSNPGQPGVSVSLAQSLQNNFALLSLFQDRMSFCQ
HHDTEVFLFFCETCSVPICRECSVGRHMGHTFVYLQDAVQDCRAITIQLLADAQQGRQAV
QLSMEKVQAMAEQVEIKAKVVQTEVKALVLRHKKALEERECELLWKVEKIRQLKAKSLYL
QVEKLHQSLTKLDSTIAAVSQVLDEGRHLDVLLARERMLTQIHELKALRGLLQPQEDDRF
MFTPPDQALYIAIQSMGLISSGAFAPVTKAHGEGLKSGLRGKPASFTVIGYDHDGEPRLS
GGDTVSAIVMSVGDGNLSAAEVTDHQNGSYTVGYVPKCEGEHLVSVLVCNQHILGSPFKV
IVKSGRSYGSLGAQVSSFGCEGEGDGQLCRPWGISVDKEGYVVVADRSNNRIQIFKPCGA
FHHKFGSLGSRPGQFDRPAGVACDSQRRIIVADKDNHRVQVFTFEGQFLLKFGEKGTKNG
QFNYPWDVAVNSEGKILVSDTRNHRVQLFAPDGSFLNKYGFEGALWKHFDSPRGVAFNHE
DHLVVTDFNNHRLLVIRPDCQSARFLGSEGTGNGQFLRPQGVAVDQENRIIVADSRNHRV
QVFEPNGNFLCKFGTQGSGFGQMDRPSGVAVTPDGVIVVVDFGNNRILKF
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatttccagactcggacctgcagacgtgcccgctctgcaaggagctgtgcggc
tcctctgctcctatctcctccagctcttctacctcctcatcttcctcacatacctcgtcc
tcctccagccagaccaccaggagactccatgtcctgccctgcctccacgccttctgcagg
cagtgcctagagggccagcgtagtcccggggacccgctgaagctgcgttgccccacctgc
gaccagaaggtgtccatctctgaggccggggtggactccctgccttcctccaacttcctc
ttcagcaacctgctagacgtggtggtgagctctgaggagcagatccagaacaagaacgga
caccaccaccggggaggcttaggaggaggctcctccggcttccatcacccccatggaggc
ctgctgcatccgcaccacctgggagagcctcagtgcagctcctgcgatgaggagaaccca
gccacctcccactgccttgactgccaggaatatctgtgcgacaactgcgtgcgggcacac
cagcgggtgcggctgaccaaggaccacttcatcgagtgcctgggagagaacctccacctg
ggccgggtcaatgccaacagcaacccgggccaaccaggggtgtcggtgtccctcgcccag
tccctacagaacaacttcgccctgctgtcactgttccaggaccgcatgagcttctgccaa
caccatgacactgaagtgttcctgttcttctgtgaaacatgctcggtgcctatctgcaga
gagtgcagtgtgggccgtcatatgggccacacctttgtttacctgcaagacgccgtgcag
gactgcagggccatcaccatccagctgcttgcagacgcacagcagggacgacaggctgtg
cagctaagcatggagaaggtccaggcaatggcagagcaagtggagatcaaggctaaggtg
gtgcagactgaagtgaaggcccttgttctgagacacaagaaagcgctggaggagagggag
tgtgaactactgtggaaggtggagaagatccgtcagctgaaggccaagtctctgtacctg
caagtggagaagctgcaccagagtctgaccaagttggacagcaccatcgctgccgtcagc
caggtgctggatgagggccgccacctagatgtgctgctggccagggagcgaatgctcacc
cagatccatgaattgaaggccctcagaggcctgcttcagccacaagaggacgaccgcttc
atgtttactcctccagaccaggctttgtacatagccatccagtccatgggcctgatcagt
agtggagcctttgccccggtgaccaaagcccatggtgagggtctgaaaagtgggcttcgt
ggcaagcctgcctcttttactgtgattggatatgaccatgatggcgagccacgtctttct
ggaggggacacagtttccgcaatagtcatgtcagtcggcgatggtaacctgtctgcggca
gaggtaacagaccaccagaatggctcatacaccgtcggctacgtgcccaaatgtgagggg
gagcaccttgtgtcggtgctggtgtgtaaccagcacatcctgggaagccccttcaaggtg
atcgtgaagtctgggcggagctatggatctttgggtgcccaagtctcttccttcgggtgc
gagggggagggagatggtcagctctgtcgtccctggggcatcagcgtggacaaggaggga
tacgtggtggtggctgatcgcagcaacaaccgcatacagatattcaagccttgtggtgcc
ttccaccataagtttggctctctgggttctcggcctggtcagtttgatcgtccagctggg
gttgcatgtgacagtcagagacgaatcattgtggctgataaggacaatcaccgtgtgcag
gtgtttacttttgagggccagttcctgctgaagtttggggaaaagggtaccaagaatggg
cagttcaactatccctgggatgtggctgtcaactctgagggtaagatcctggtctcagac
accaggaaccaccgtgtgcagctcttcgcccccgacggctctttcctcaacaagtatggc
tttgaaggggccctgtggaaacactttgactctcccagaggagtggcctttaatcatgaa
gaccacctggtggtgactgacttcaacaaccaccggctcctggtcatccggccggactgt
cagtcagctcgctttctgggctctgagggcactggaaacgggcagtttctgcggccccag
ggtgttgctgttgaccaggaaaaccgcatcatcgtggccgactcccgcaaccacagagtc
caagtgttcgagcccaatggaaacttcttatgcaaatttggcacgcaggggagtggcttt
ggacagatggatcgcccctccggtgtggctgtgacgcctgacggagtcattgtggtcgtt
gactttggaaataatcgcattctcaaattctaa
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