Xiphias gladius (swordfish): 120786349
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Entry
120786349 CDS
T07311
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120786349 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120786349 (cnot3b)
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120786349 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120786349 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
120786349
NCBI-ProteinID:
XP_039977710
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All DBs
Position
LG24:22815339..22849334
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AA seq
929 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKFIEKHRYHI
RMLETILRMLDNDSVQVEAIRKIKDDVEYYLDSSQDPDFEENEFLYDDLDLEDIPQSLVA
TSPPGHSHLEDEIFQHSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDSEVSQSP
VKNGNPSSSLSSSSSSSSSSSSSSSSSSSVSGLTSSSLVSMATIAGGGSSGSGGNSHHGN
SGGLLSNTSAGSYSNATQQQLHPSAQQQQAKNSVSSSSSAPITNSSTSTNSHPASVASSP
PNASAQGLLTSNSQPQAPSGPTPTSNSFGLGLGLSLGKGGMSGSITTSPMSGGLGLSGMP
ASLSTMAGLLSSSTPAPYAQAAASGTVGSGLPGSLGGVSTTTTNSAVGSIGSGSITVGGP
TSSTGGLLGAAAGLSGVGSGILGLGSSQSGLQGSSLVSPSPVGGLAPSSGVGVIGSSSGP
AGSGVVGGNSSLSVRPPSRQKQNGSTSYSAVVADSTTESALNSASQSQISQPSSLTSTAN
QPKDTGPSLLGSMSLSSSSPSPASYSEAKVASGGSLLNGPLSYSQSSDSIKPQEPLSSLK
SMAERAALSSGMEGDVPSLHLTPDIFPSSTAAPSGPPSAPQPSLSEVSIPPSLGVCPLGP
VPLSKDQLYQQAMEEAAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDTVEFYQ
RLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY
IYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggtgaaatagatcgatgtctgaaaaaagtagcggag
ggagtggaacagtttgaagacatctggcaaaagcttcacaatgcagccaacgcgaaccag
aaggagaaatatgaagcagacctcaagaaagagattaaaaagctgcagcgtcttcgagac
cagatcaagacgtgggtggcatccaatgagatcaaagacaaaaggcagctagtagagaac
cgcaaactcatagaaacgcaaatggagcggttcaagatagtggaaagagaaaccaagaca
aaagcgtactcgaaagaaggtttgggtctggcacagaaggtggacccggcgcagagggag
aaggaggaggttgggacgtggctaacgaatacgatagacacgttaaacatgcaggtggac
cagtttgagagtgaagtggagtctctgtcggtccagacaagaaaaaagaaaggagacaag
gagaagcaggaccggatcgaggagctgaagaagttcattgagaagcatcgataccacatc
cggatgctggagacaatactgaggatgctggacaacgactcagtgcaggtggaagccatc
aggaagatcaaggatgatgtggaatactatctagactcgtcgcaggatccagacttcgag
gagaatgagtttctatacgacgacctggatctggaggacattcctcagtcgctcgtcgcc
acctccccaccggggcactcgcacttggaggacgagatcttccagcactccagcagcaca
cccacctccaccacctcatcttcacccatccccccctcacctgccacttgcactacggag
aactcagaggacgacaagaagagaggacgttcaacagacagtgaagttagtcagtcacct
gtgaagaatggaaacccctcctcctcgttatcttcctcctcctcttcctcctcctcctcc
tcctcttcctcctcctcctcttcctccgtctcaggactgacctcatcctcactggtctct
atggcgaccatcgctgggggaggaagcagcggctctgggggcaacagtcatcacggcaac
tcggggggtctcctctccaacacttccgctggcagctacagcaacgccacccagcagcag
ctgcacccatcagcgcagcaacaacaggccaaaaactcagttagctcctcctcctcagct
cctatcaccaactctagcacctccaccaacagccaccccgcctccgtggcctcctctccc
ccgaacgccagcgcacaggggctcctaacttcaaactcccagccccaggctccgtcgggg
cccacgccaacctccaacagcttcggcctcggcttgggcctctctctggggaaaggtggc
atgtctggctccatcaccaccagcccgatgtccgggggccttggtttgtcagggatgccg
gcatccctgagcaccatggcgggccttctgtccagctccaccccagcaccctacgctcag
gcagctgcctcgggcacggtcggctccggcttacctggctctctgggaggcgtcagcacc
accacaaccaacagcgcggtgggttccatcggcagtggaagtatcacagtcggcgggccg
acatcttcgacgggaggtctgcttggcgcggcggcagggttgagcggcgtcggctctggg
attctgggtttgggttccagtcagtcggggttgcaggggtcttctctggtgtcaccgagc
ccagtaggaggcctagctccaagcagcggcgtaggagtcatcgggagcagctcgggtcca
gcagggagcggagtggtgggaggaaactcgtcgctctctgtcagaccgccgagccgacag
aagcagaatggtagcactagttacagtgctgtggtagcagacagcacaacagagtccgcc
ctcaatagtgccagccaatcgcaaatcagccaaccctcgtctttgacctccacagccaat
cagcctaaggacactggtcccagtttactgggctctatgagcttgtcgtccagctctccg
tcaccggcctcctacagcgaggccaaagtggcgagcggcggcagcctgctgaacgggccg
ctgtcctactcacagtcctccgatagcatcaagccccaggagcctctgagcagcctgaag
tccatggccgagcgagcagcactcagctcagggatggagggagacgtgccttccctgcac
ctcaccccagacatcttccccagcagcactgcggccccctcggggcccccgtcagcacct
cagccctcgctgtcagaggtcagcatccccccgtcgttgggggtctgcccgctggggcca
gttcccctgtccaaagaccagctataccaacaggccatggaggaggcggcgtggacgcac
atgccccacccgtccgactccgagaggatcaggcagtacctgatgaggaacccgtgcccc
accctgcctttccaccaccaggtgccaccgccccactccgacactgtagagttttaccag
aggctttccacggaaaccctcttcttcatcttttactacctggagggcactaaggcccag
tatctggcagccaaggccctgaagaagcagtcgtggaggttccacacgaagtacatgatg
tggtttcagaggcacgaagaacccaagaccattactgatgagtttgagcagggaacctac
atttactttgactatgagaaatggggccagcggaagaaggagggtttcacatttgagtac
cggtacctagaagaccgagacctccagtga
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