Xiphias gladius (swordfish): 120786925
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Entry
120786925 CDS
T07311
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120786925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120786925
03036 Chromosome and associated proteins [BR:
xgl03036
]
120786925
Enzymes [BR:
xgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120786925
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120786925
mRNA degradation factors
5'-3' decay
Decapping complex
120786925
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120786925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Motif
Other DBs
NCBI-GeneID:
120786925
NCBI-ProteinID:
XP_039978652
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All DBs
Position
LG24:complement(20348900..20356809)
Genome browser
AA seq
489 aa
AA seq
DB search
MATARTENVGPVVMGLNKQNGQLRGQTKPPSVQPAPTTQGKAMGAPQKAGGAPQDGGGIK
FGDDWKKSLKLPPRDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQVSQICIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKVQMMVMDE
ADKLLSQDFVVLIEDIIGFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQFYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAR
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEYHSTSADCDVEEAEK
KPGREQDST
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgccagaacagaaaacgttggcccagtcgtcatgggactgaacaagcagaac
gggcagctcagaggacagaccaaaccaccttcagtccagccagcacccacaactcaagga
aaggctatgggtgcaccccagaaagcaggtggcgcccctcaggatggagggggtatcaag
tttggagatgactggaaaaagagcctaaagctccctcccagagacaacagggtcaaaacc
tcagatgtcacatccaccaaggggaatgaatttgaagattactgtctcaaacgagaactc
ctgatgggcatctttgagatgggttgggagaaaccgtcccctatccaggaggagagcatt
cccatcgccctgtctggacgggatattctggcccgggctaaaaatggaacagggaaaagt
ggagcctatctcatcccactgctggagaggatagacctgaaaaaggaccacatacaggcc
attgtcatggtgcccacccgtgagctggcgctgcaggtgagccagatctgcatccagatc
agtaaacacctgggaggagtcaaagtcatggccaccactgggggcaccaacctgcgagat
gacatcatgcgcttggatgagaccgtgcatgtggtcatcgccacccctggcaggatcctg
gacttaataaagaagggagtggcaaaggttgataaggtccagatgatggtcatggatgag
gcggataagctgctctctcaggactttgtggtgctcattgaggacatcattggcttcctg
gccaagaacaggcagattctgctctactctgcaaccttcccgatcagtgtgcaaaagttc
atggccaagcaccttcagaaaccctacgagataaacttgatggaggagctgactctgaag
ggcattactcaattctacgcctacgtcactgagaggcagaaagtccactgcctcaacaca
ctgttctccaggcttcagatcaaccagtcaatcatcttctgtaactccactcagagggtg
gagctgttggccaagaagatcactcagcttggctactcctgtttttacatccacgctagg
atgatgcaggaatacagaaaccgtgtgttccatgacttcagaaacggactgtgcagaaac
ctcgtgtgcacagatctcttcaccagaggtattgacatccaggctgtcaacgtagtcatc
aacttcgacttccctaagaacgctgagacttacctccatcgtattggaagatcagggcgg
tttggtcacctgggcttggccatcaacctgatcacgtcagaggatcgcttcaacctgaag
gccattgaagaccagctggtgaccgacatcaagcccattcccagcagcatcgacaagagc
ctctatgtggccgaataccactcaaccagcgccgactgtgatgtggaggaggccgagaag
aaaccagggcgcgaacaggatagcacctaa
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