Xiphias gladius (swordfish): 120787279
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Entry
120787279 CDS
T07311
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03013
Nucleocytoplasmic transport
xgl03015
mRNA surveillance pathway
xgl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120787279
09122 Translation
03013 Nucleocytoplasmic transport
120787279
03015 mRNA surveillance pathway
120787279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120787279
03041 Spliceosome [BR:
xgl03041
]
120787279
Enzymes [BR:
xgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120787279
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120787279
Spliceosome [BR:
xgl03041
]
Complex C
Other components
EJC/TREX
120787279
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120787279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Motif
Other DBs
NCBI-GeneID:
120787279
NCBI-ProteinID:
XP_039978868
LinkDB
All DBs
Position
Unknown
AA seq
117 aa
AA seq
DB search
MSDTYVDNELLDYEVDEVEAVGVGAVGGAGDMSVKKAGVKGSYVSIHSSGFRDFLLKPEL
LRAIVDCGFEHPSEVQHECIPQVILGMDVLCQAKSGIGKTAVFVLATLQQLEPITGQ
NT seq
351 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatacctatgtggacaatgagttgttggactatgaggtggatgaggtggaggct
gtaggggtcggggcagttggaggtgcaggtgacatgtcggtaaagaaggcgggagtaaag
ggctcctatgtgtccatccactcatctggattcagggacttcctgctgaaacctgaactg
cttagagccatagtggactgtgggtttgagcatccatctgaggttcagcatgaatgcatc
cctcaggtaattcttggtatggatgtgctctgtcaggccaagtctgggattgggaagact
gcagtgtttgttctggcaaccctgcagcagctggagcccatcactggacag
DBGET
integrated database retrieval system
