Xiphias gladius (swordfish): 120788317
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Entry
120788317 CDS
T07311
Symbol
casc3
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3
KO
K14323
protein CASC3
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03013
Nucleocytoplasmic transport
xgl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120788317 (casc3)
03015 mRNA surveillance pathway
120788317 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120788317 (casc3)
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120788317 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
120788317
NCBI-ProteinID:
XP_039979958
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All DBs
Position
LG3:25058449..25076548
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AA seq
781 aa
AA seq
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MADRRRRRRRASQDSEDDDESGSGSDSGRSGSPAIKSRGRDPDPAEATASRAEAKSDVES
ECESEDGVGEAVLSDYDSADPEENGSHSEGVEEEEEAEQYSDEEAPAAAAAAAAAASEPK
PPAADGPAKGEDGEEEEAEGEGGGQSKEESKEENKAEEKGNLAGERQSGDGQESTDDPET
KAGGKPGQQLDDDEDRKNPAYIPRKGLFFEHDVRGHAQEEERPKGRNRKLWKDEGRWEHD
KFREEEQAPKSREELIAIYGYDIRNGGGPGDRPYRQRRPRQSVSPSRDKRWREGGGERPV
RSWQSGGGGLNRGGAPPPSSIQTSSTSPSSXPLSSAQRSNNPSRPPPSRSRPSHQNQMHL
PPQSHYRNNESNAPQMHPRERQGPKAQSEPAGDRSVVSRGGRGGGGRGGPSLVIENNTVS
QGGVGEQDLSLSAATTAASSQPGGYQSASPRRQQQEQRGSADRSASGLAASSTTTDPSLQ
SAATNREASPPIERPVERKSYSLARRTRSRPADLGSKQPSMEESAAGGNASSPGSVGGKS
WTGGGDGPSQAGAAGLTELDQDVARLSLAGQSWSQSPTSYIRSEMRGLPNPMHIPGGPPQ
FSSMEEMGVGSNRAKRYSSQRQRAVPEPAPPMHLGVMEGHYYEPMSYQGPIYAHGDGPAP
IPPQGMLVQPEMHIPHPGLHPHQSGAPIANPALYGGPPVSLSPGQPQQLLPPPFYPPPGV
MTFPYPAMYPNPQGQSQVTYGGVTYYDTVQQQAQPKPSPPRRTSQPVTVKPPPPEVPFAS
E
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgaaggaggcggcgcgcgtcccaggacagcgaggacgacgacgag
tccggttcgggttcggacagcgggaggtcggggtccccggcgatcaagagccgggggagg
gatcctgacccggcggaggcgacagcatcccgggccgaggcgaagagcgacgtggagtcc
gagtgtgagagtgaagatggggtgggagaagctgtcctctctgactacgacagtgcagac
cccgaggaaaacggctctcattcagagggagtggaggaggaagaggaggcagagcagtac
agcgatgaagaagctccagcagcagcagcagcagcagcagcagcagccagtgagcccaaa
cctcctgctgccgatggcccggcaaagggagaggacggggaggaggaggaagcagaaggg
gagggaggaggacagagtaaagaggagagtaaagaggagaataaagctgaggagaaagga
aatctagctggagagagacagagtggcgatggacaggagtccacggatgatcccgagacg
aaggcgggaggtaaacccggtcagcagctcgatgatgatgaggacagaaaaaacccggcc
tacatccccaggaagggtctgttcttcgagcacgacgtcagaggacacgctcaggaggag
gagagacctaaaggtcgaaacaggaagttgtggaaagacgagggtcgctgggagcacgac
aagttcagggaggaggagcaggcgcccaagagccgcgaggagctcatcgccatctacggt
tatgacatccgaaacggtggcggccccggagaccggccatacaggcagcgcaggcccagg
cagagcgtgtctcccagcagagacaagcggtggagagagggaggaggagagcgaccggtc
cgatcctggcagagcggaggaggagggctgaaccgaggaggagcccctccaccttcgtcc
atccaaacctcctcgacatccccttcctctnnccctctctcctccgctcagcgcagcaac
aacccctccagaccgcctccctcccgcagcagaccatcccaccagaatcagatgcacctc
ccacctcagtcccactacaggaataatgaatctaacgcgccccagatgcatccccgagaa
cgacaaggccctaaagctcaatcagagcctgcgggagacaggtctgtggtcagcagggga
gggcgcggtggtgggggaagggggggtccctctctggtcattgagaacaatactgtcagc
caaggaggcgttggggaacaggacctgagcttaagtgccgcaacgacggcggcatcgtca
cagccgggcggttaccagtccgcttcaccgagacgacagcagcaggaacaacgaggcagc
gccgacagatctgcgtctggattggctgcttcctccaccaccactgacccctcccttcaa
tcagcagcgaccaatcgggaagcctctcctcccattgagcggccggtggagcgtaaatct
tactcgctggctcgcaggactcgctctaggcccgcagacctgggcagtaaacagccgtcc
atggaggagtctgcggccggagggaacgcctcgtcccccggcagtgtgggagggaagagc
tggacgggaggcggagatgggccgagccaggcaggagcagcagggctgacggagctggac
caagatgtggctcgactcagtctggcaggacagagctggagccagagcccgacgtcatat
atccgctctgagatgagaggccttcccaaccccatgcacatccccggcgggccgcctcag
ttctccagcatggaggagatgggtgttggctccaatcgggccaaacgctactcctcccaa
cgtcagagagccgtacctgagccggcgccgcccatgcacctgggagtgatggagggacac
tattacgaacccatgtcgtaccagggaccaatctacgcccacggggatggccccgccccc
atcccaccacaaggcatgctggtccagcctgagatgcacatcccccaccccggtctccat
ccccaccaatcaggtgccccgattgctaaccccgccctctacggaggcccacctgtttct
ctgtcaccggggcaaccacagcaactgctgccgccgcctttctaccctccgccaggcgtc
atgaccttcccttaccctgccatgtacccaaacccacagggtcagtcccaggtgacctat
gggggtgtgacgtactacgacacggtgcagcagcaggctcagcccaagccttcgcccccc
cgccgcacgtcccagcccgtcactgtcaagcccccccctccggaggtgccctttgcctca
gagtga
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