Xiphias gladius (swordfish): 120788713
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Entry
120788713 CDS
T07311
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xgl03041
]
120788713 (ddx1)
03016 Transfer RNA biogenesis [BR:
xgl03016
]
120788713 (ddx1)
Enzymes [BR:
xgl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120788713 (ddx1)
Spliceosome [BR:
xgl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120788713 (ddx1)
Transfer RNA biogenesis [BR:
xgl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
120788713 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
120788713
NCBI-ProteinID:
XP_039980644
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All DBs
Position
LG4:14820859..14828330
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESVPLILGGGDVLMAAETGSGKTGAFSIPL
IQIVYETLKDQQEGKKGRASIKTGGAVFNKWQMNPYDRSTAFAIGPDGMCCQSREFKEWH
GCRSTKGVTKGKYYYEMTCHDQGLCRVGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDIIGCYLDVDNGQISFSKNGNDLGVAFDIPQNLRNQPFFASCVLKNAELKF
NFGGENFKHPPKSGFVALDRAPEGHTVKSSQTGSAKVSQVKASSNAPKALIIEPSKELAE
QTLNNVKQFKKYVDNPKLRELLVIGGVAAKEQLAALEQGIDIVVGTPGRLDDLISTGKLS
LSQVRFLVLDECDGLLSAGYTDFISRIYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKSDRLWERLGKNHIRTDEVHAKDNTRPGAN
SAEMWSEAIKVLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFMQQGGGPDSKSHQL
SCVCLHGDRKPNERKNNLERFKRKEVRLLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVALEKEKVWYHVCPNRGRGCYNTRLKEDGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKVPLDEFDGKVTYGQRRALGGGNYKGHVDVLAPTVQELATLER
EAQTSFLHLGYMPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgttctctgaaatgggggtaatgcctgaaatcgcgcaggctgtggaagagatg
gactggctgctacctactgacatccaggcagagtctgttccccttattcttggtggagga
gatgtactaatggcagcagaaactggcagcggtaaaacaggagccttcagtatcccattg
atccagattgtgtacgagaccctgaaggaccagcaggagggcaagaagggcagagcctcc
atcaagactggaggagctgttttcaacaaatggcagatgaatccttacgaccgcagtaca
gcctttgccattggtccagatggaatgtgctgccagagcagggagtttaaagagtggcat
ggctgtcgctccacaaaaggcgtcaccaaagggaagtactattatgagatgacctgccat
gatcagggtctttgtcgggtaggctggtccaccagtcaggcagcactggacttgggaact
gataagtatggttttggttttggagggactggaaagaaatccaacaacaagcagtttgac
agctatggagaggagtttaccatgcatgacattattggttgctacctggatgtagacaac
ggccagatttccttctccaaaaatggtaacgacctcggtgtggcttttgacatccctcaa
aatctgaggaatcagcctttctttgcctcctgtgtgctcaagaatgcagagctgaagttc
aactttggaggagaaaacttcaaacaccccccaaagagtgggtttgttgccctggaccgc
gctccagagggtcacacagtcaaatcttctcagacaggcagcgctaaagtcagtcaggtg
aaagcgtcatccaacgcgcccaaagccctgatcatcgagccgtctaaagaattagccgag
caaactctcaacaatgtcaaacaatttaagaaatatgtggataaccccaaactcagggaa
ctactggtgattggtggtgtggctgccaaggagcagctggctgctctggaacaagggatc
gacattgtggtgggaacacccggcagactggacgacctcatatccactgggaaactcagt
ctgtcccaagtccgctttctggtcctggatgagtgtgatggcctcctgtcagcaggctat
acagattttatcagcagaatctacaaccaaatcccacaggtcacctctgatggcaagaga
ctgcaggtgattgtttgctcagccactctgcattcctttgacgtgaagaagttgtctgag
cgcatcatgcactttccgacatgggtggacctgaagggggaggactctgttccggaaact
gtccaccatgtggtggtgcctgtcaatcctaagagtgatcgtctctgggagcgcctgggc
aagaaccacatccggactgatgaagtccatgccaaagataacaccagaccaggagccaat
tctgcagaaatgtggtcagaagccatcaaagtgctgaagggcgagtacacagtaagagcc
atcaaagagcacaagatggaccaggccataatcttctgtcgcaccaagatcgactgtgac
aatatggaacagtacttcatgcagcaaggaggaggtccagacagtaaaagtcaccagtta
tcttgtgtttgtctccatggtgatcgcaagcccaatgagcgaaaaaataacttggagcgt
ttcaagagaaaagaggtaaggctcctgatctgcacagatgtagctgccagaggaattgac
atccacggagttccctacgtgattaacgtcaccctgccagatgagaagcagaactatgtc
catcgtattggcagagttggaagagctgaaagaatgggactggccatctccttggtcgct
ctggaaaaagaaaaggtgtggtaccatgtttgccccaaccgaggcagaggttgctacaac
acccggctgaaggaggatggaggttgcaccatctggtacaatgagaaagagctcttgtca
gaaattgaggagcatctgaagtgcaccatcacccagtgtgagccagacattaaagtacct
ctggatgagtttgatggaaaggtcacctatggtcagcgcagggcattgggaggtggtaac
tacaagggtcacgtggacgtgctagctccgacggtccaggagctggctaccctcgagaga
gaagcccaaacatctttccttcacctaggatacatgccaaaccagcttttcagagccttc
taa
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