Xiphias gladius (swordfish): 120788789
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Entry
120788789 CDS
T07311
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120788789 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xgl03000
]
120788789 (arid1b)
03021 Transcription machinery [BR:
xgl03021
]
120788789 (arid1b)
03036 Chromosome and associated proteins [BR:
xgl03036
]
120788789 (arid1b)
Transcription factors [BR:
xgl03000
]
Eukaryotic type
Helix-turn-helix
ARID
120788789 (arid1b)
Transcription machinery [BR:
xgl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120788789 (arid1b)
Chromosome and associated proteins [BR:
xgl03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120788789 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
120788789
NCBI-ProteinID:
XP_039980841
LinkDB
All DBs
Position
LG4:complement(1024099..1088632)
Genome browser
AA seq
2076 aa
AA seq
DB search
MDASLGSATSTTTNNPPPSGTSSEFNHYYGNGRGGPCFDQHGGQQSPGTGVTAALSVHNT
MDQVQNSHEGYSNNSPYNHYPNYRPGYGTSGYGGMMSPSRQGNSLMGPGSGSSAAANHSK
AAMVATSSPAGVGGVGGNSGGFQRFPGQGQQQQQQQQQQQQQQQHPSGATPTLNQLLTSP
SPMMRGYGGGYPDYNPSAQQQQPPPSMGLAKDMGSQYGSAAHGWGGQQRNHPALSPGNNG
QGSGRSQVPPMDPMAMKRSQLYGMSNNPYSQQQQGAPYPGQPYGAPSPHRYPMAMPGRGQ
MGMGGMQYPQQQMGSQYSQQQQQQQQQQQQQQQQQQQQQQQQNMGGYCQPSQPPYFSPPQ
QQPAAPSQPPYMQPRPLPQQEVPQEAYGGRGQSAAMTPGKPNHEEMSLSQQERPSSLPDL
SGSIDDLPTGTEAAVSSGASGSGSAQGDQGTPARSPFSPHVSPRHPPPARTGPSPSPSPS
PAGSSSQSRSGQLSPATSGPGAQLTPQGSGPGSDVGHHSSQSAMTQDRGFPPSMQRSTPG
PQFGPQQSAPPMSPHPTPGGPMHHGSYQHGSSYGQYGPPGNYPRPPHYGGAPSANYSGSG
PSPGLANSLGLNASSPMHGQGPSTPAGRGPGPGAGGRPYPAGGSAMAPTSPGMPQPAGQG
MRPPGPNASRKPPDVSPNAGPSANSSSLSTAAAPSRPPFARSPVYHNQSWPRGRPALSPT
LHPSHLPHPPHHSQQGTNAVPTPPEHYGQGSYPGMAPMGGMGPGGPGGPGGPGGPAGPYS
QQPGSNSGRMTPQGPPYNTLPSGPMMMPAEGMGAHLDAKQRVELSKEGVGPATEPPKPKK
PSVATMTNEKITRLYEMGSEPERRLWVDRYLSFMEERGTPVPNLPAVGKKPLDLCRLYLA
VREIGGLAMVNKNKKWRELSSLLNVGTSSSSASSLKKQYIQYLFAYECKVERGEEPPPEA
LGPAGDTKKPSSLQAKIQPPSPANSGSLQGPNTPQSSSSSLTEAPGDLKPPTPASTPHSQ
MGPQPGNRTMGGVSVQDPFSEGSDPAFNNKRGPGPGGTPYQQGGGPTDPSMRMQYDVNKD
PYGGPRKGPGPGEAFGPGQMPSGAVQDMYPRGPPSGPLTGMGPRPQYPYGPGYERRPDHV
MGLEGGMAPPGGQNSMGQTGNEASMYPTNRYPHQRHGHDGYGQQYPHSMAYTSHQPLYPQ
QQGYKRPMEGMYPPSKRHEGEGFGVQQYGSQQPDMFGPPYGGVGGGYMGPERRPVQGQYP
YPYSRDRQGPPQHSLMGSGPPSVPGGPGEGPQANIWHHRTDMGYTYGRQGQGPPFPGINR
GDDQEGRAPQDSQWPPSHLGHRQPPYPPHSSSSSSSSSMPPLPSRQPPSSFQATPTVPNH
VTRSHSPSSFPRPLGGSLSPNSAPYLPSMKKPGVPGVPPVPPPAQGLPLINREVSFPPGS
VEATAPKLKPRRRLTAKDTGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVGSFS
LTQLPGFLELIVEFYRRCLIQIFGILEDYEVGAKDQRTLLVPLPNPPEEEEEEGEEDEEE
EVLKMLPAAASESNSRSAEEMEETSLPLTTAPAISAEEAMDSEPAVKEEVEVKEERQEQP
EPRPRQASKYDKLPIRVEERAEEWEEVEERWAELSRPNGFISGLLHWKAGGGDSTTHIQT
HFESRTGRSTPPKPTEREERGGGDEEREGGGEGREEAEKNLPSAEETPPETRPGSLSEVG
GQRSPISQLEDEPRCWDEAPLSTAESWQDSLAKRCVCIANIVRGLSFVPGNDADMSRHPG
LVLILGRLVLLHHHHPRRKRTPPTYQREEEQGLACSRDEWWWDCLAALREHTLVTLANIS
GQLDLSRYPESICLPILDGLLHWMVCPSAEAQDPFFSAGGFSSLTPQRLVLECLCKLSIQ
DCNVDLLLATPPFGRQQKLFATLVRLVGERKSQVCREMAVAVLSHLVQGDSAAARAVALQ
KGSVGTLIGFLEDSVSMAQYQKSPHGLLHAASPPEPPSINMMCRAARALLAMARVEENRT
EFVLYESRLLDISLSAALNSSVAAIMCEVLYKVGRS
NT seq
6231 nt
NT seq
+upstream
nt +downstream
nt
atggatgccagcctgggatcagccaccagcaccaccaccaacaaccctcctccaagtggg
accagctccgagtttaatcattattatgggaatggaagaggagggccttgctttgatcaa
catggcggacaacaaagcccagggactggggtaacagcggcgctctcggtacacaacacc
atggaccaggttcagaactcccacgaaggctacagcaacaacagcccgtacaaccactac
ccgaactatcgacccggctacgggactagtggatacggaggcatgatgagtccttcacgc
caggggaacagcctgatgggcccgggcagcggcagctcggccgctgctaatcacagcaaa
gcggctatggtagctaccagttccccggctggagttggaggcgttggcggaaacagcgga
ggctttcagcggtttcctggacaggggcaacagcaacagcagcagcagcagcagcaacag
cagcagcagcagcacccgtccggggctacgccgactttgaatcagttattgacgtccccg
agcccgatgatgcggggttatggaggtggatatccagactataatccctctgcacagcag
cagcagccgccgccgagcatggggctggccaaagacatgggctcccagtacggttcggct
gctcacggctggggaggacagcaaagaaatcacccggccttgagcccggggaataacggg
cagggtagcggcaggtcccaggtgccgcccatggacccgatggcgatgaagcgctctcag
ctctacggaatgagcaacaacccgtactcccagcagcagcagggggcgccataccccggc
cagccctacggcgccccctccccccacagatacccgatggcgatgcctggcagagggcaa
atggggatgggagggatgcagtaccctcagcaacagatgggttctcagtacagtcagcag
cagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcag
cagcagaacatgggtggttactgtcagccgagtcagcctccgtacttcagcccgccacag
cagcagccagccgcccccagccagccgccgtacatgcagccccgcccactgccacaacag
gaggtgccgcaggaggcgtacgggggtcggggccagtccgccgccatgactcctgggaaa
ccaaaccacgaggagatgagtctaagccaacaggagagaccgtccagcctgccggatctg
tccggctccatcgatgatctgcccaccggcaccgaggctgcggtgagttcaggggcgtca
ggatccggcagcgctcagggcgaccaggggactccagcccgttctcctttctccccccac
gtatcgcctcgtcaccccccaccagctcgcaccggaccctccccctcaccctcgccgtcc
cctgccgggtccagcagccagtcacgatccggacagttgtcccctgccaccagcggacca
ggcgcacagttgacccctcagggctctgggcctggatcagatgttggtcatcattcctcc
cagtctgccatgactcaggacagaggtttccctccttccatgcaacgtagcaccccaggg
ccacagtttggcccccagcagtcagcaccacctatgtcccctcacccaacaccggggggg
cccatgcaccacggctcctaccagcacggcagctcatatggccagtatggacccccaggt
aactaccctcggcccccccactatggaggggctcccagtgccaactacagcggctccggt
cccagccccggcttagccaacagcctggggttgaatgccagcagtccgatgcacggtcag
ggcccctccaccccagcaggtcgcggccccgggcccggcgccggggggcgaccctacccc
gccggtgggagcgccatggctcccacctccccaggcatgccacagcccgctggtcagggt
atgaggcctccagggcccaacgccagccgcaaaccaccggacgtcagccccaatgctggg
cccagtgccaactcctcatccttgtccacagccgccgctccgagcaggcctcccttcgct
cgttcgcctgtctaccacaaccagtcctggcccaggggtcgacctgccctctctcctact
cttcacccctcccaccttcctcaccctcctcaccactcccagcagggcaccaatgctgtg
ccgaccccccctgagcactatgggcagggcagctacccgggcatggcaccaatgggagga
atgggccccggaggccccggaggtcccggaggcccaggaggtcctgcaggtccctacagc
cagcaaccaggcagtaactctgggaggatgacgccacagggacccccctacaacaccctg
ccctcaggccccatgatgatgccagcagaagggatgggcgctcatctagatgccaagcaa
agggttgagctcagcaaagagggcgttggtcctgccactgaaccacccaaacccaagaag
cccagcgtggccaccatgaccaacgagaagatcacccggctgtatgaaatgggctctgag
ccggagaggaggctgtgggtggaccggtacctgtccttcatggaggagagggggacaccc
gtcccaaacctgcctgccgtcggaaagaagccgctggacctgtgcagactttacctggct
gtcagagagatcggaggcctggccatggtgaataagaataagaagtggagggagctatcg
tccctgttgaacgtggggacgtccagcagctcggccagctctctgaagaagcagtacatc
cagtacctgtttgcctacgagtgtaaggtggagcgcggagaggagcctccacctgaggcc
ctggggcccgccggagacaccaagaaaccttcgtcactccaggccaagattcagccacct
tccccagccaactcgggctccctgcagggccccaacacccctcagtccagcagcagctct
ctgaccgaggcccccggagacctgaagcccccgacccccgcatccaccccgcacagccag
atgggaccccagcctggaaacaggaccatgggaggggtgagcgtccaggacccgttctct
gaaggcagcgatccagccttcaacaacaagcgaggcccgggacccggcggcaccccctac
cagcagggaggaggtccaacagacccctctatgaggatgcagtatgatgtcaacaaggac
ccgtacggaggaccgaggaaaggtccagggcccggcgaggccttcggtcccggtcagatg
cccagcggcgccgtgcaggacatgtacccccgcgggccaccctccgggcccctgacaggg
atgggccccagaccccagtacccctacggccccggctacgagcggaggccggaccatgtg
atggggctggagggaggcatggcgccccccggaggtcagaacagcatgggtcagactgga
aacgaggccagcatgtaccccaccaacagatacccccaccagaggcatggacatgacggc
tacggccagcagtatcctcacagcatggcctacacttcccatcagcccctgtaccctcag
cagcagggttacaagcgtccgatggaggggatgtatcctccctctaagcgccacgagggg
gagggcttcggcgtgcagcagtacggctctcagcagcccgacatgttcggccccccctac
ggaggagttggtgggggctacatgggccccgagcggcggccggtccagggccagtacccg
tatccatacagccgggaccgccaaggtcccccccagcacagcctgatgggctcaggaccg
ccatcggtgcccgggggtcccggggaggggccgcaggccaacatttggcaccacaggaca
gacatgggctacacatacggcaggcagggccaggggccccccttccctggcataaaccga
ggggacgaccaggagggcagggccccccaggacagccagtggcctcccagtcatctaggc
catcgccagccgccataccccccccactcctcctcttcctcctcctcctcatccatgccc
cccctgccatccagacagcccccctcctccttccaggcgacgcccactgtccctaaccat
gtgacccgctctcacagcccgtcctccttcccccggcccctggggggctctctgtccccc
aacagcgccccctacctgccctctatgaagaaacctggggttcccggtgtcccccccgtc
cccccgccagctcagggcctccccctgatcaacagagaagtcagcttcccccccggctct
gtggaggccactgcccccaaactgaagccacgacgccggctcaccgccaaggacacagga
accccggaggcgtggcgagtgatgatgtcgctgaagtccggcctattagcagagagcacc
tgggctctggacaccatcaacatcctgctgtatgacgacagcactgtgggctccttcagc
ctcacacagctgcctggtttcctggagctcatcgtggagttttaccgccgctgcctcatt
cagatcttcggcatcctggaggactatgaggtgggagccaaggaccagaggaccctgctg
gtacccctgcccaacccccctgaggaggaggaggaggagggggaggaggacgaggaggag
gaggtgctaaagatgctgccggctgccgcctccgagtctaacagtcggtcagcagaagag
atggaggagacgtcactgccactcacaactgctcccgccatcagcgctgaggaggcgatg
gacagcgaaccggctgtcaaggaggaggtggaggtgaaggaggagcggcaggaacagcca
gagccccgcccccgacaggccagcaagtacgacaagctgccgatcagggtggaggagagg
gcggaggagtgggaggaggttgaggagcgctgggccgagctcagtcgacccaacggcttc
atcagcggcctcctgcactggaaggccgggggaggagactccaccactcacatccagaca
cactttgaatcccgaacaggacgctccacccccccgaaaccaacggagagggaggagagg
ggtggaggagacgaggagagggagggaggaggggaggggagggaggaggcggagaagaac
ttgccgtctgcggaggaaacgcctcctgaaacacgaccaggctccctgtctgaggtcgga
ggccagaggtcgcccatcagccagctggaggacgagccccgctgctgggacgaggctccg
ctgtccacggccgagtcctggcaggactcgctggccaaacgctgcgtctgcatcgccaac
atcgtgcgcggcctctccttcgtccccggcaacgacgccgacatgtcgcggcaccccggc
ctggtgctgatcctgggccggctggtgctgctgcaccaccaccacccccgcaggaaacgg
acgccgcccacctaccagcgggaggaagagcagggtctggcctgcagccgggacgagtgg
tggtgggactgcctggcggcgctcagggagcacacgctggtgacgctggccaacatttcg
ggccagctggacctgtcgcggtaccccgagagcatctgcctgcccatcctggacgggctg
ctgcactggatggtgtgcccgtccgccgaggcccaggaccccttcttctcggcgggcggc
ttctcctcgctcacccctcagagactggtgctggagtgtctgtgcaagctgagcatccag
gactgcaacgtggacctgctgctcgccacgccgcctttcggccgccagcagaagctgttc
gccacgctggtgcgcctcgtaggcgagcggaagagccaggtgtgccgggagatggcggtg
gccgtcctgtcccacctggtgcagggggactccgccgcggcgagggccgtcgccctgcag
aagggcagcgtggggactctgatcggcttcctggaggacagcgtgtccatggctcagtac
cagaagagtccgcacggcctgctgcacgccgccagcccgccggagccgcccagcatcaac
atgatgtgccgcgccgccagggcgctgctggccatggcgcgggtggaggagaaccggacg
gagttcgttctgtacgagagccggctgctggacatctcgctgtcggccgccctcaactcc
tcggtggcggcaatcatgtgtgaagtactgtataaagtgggtcgctcgtga
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integrated database retrieval system
