Xiphias gladius (swordfish): 120788924
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Entry
120788924 CDS
T07311
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120788924 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xgl03041
]
120788924 (cdc40)
Spliceosome [BR:
xgl03041
]
Complex C
Other components
Step II factors
120788924 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
WD40_WDHD1_1st
EIF3I
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_RFWD3
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
Beta-prop_Vps41
WD_LRWD1
FAM219A
Motif
Other DBs
NCBI-GeneID:
120788924
NCBI-ProteinID:
XP_039981138
LinkDB
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Position
LG4:complement(12023535..12039541)
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AA seq
581 aa
AA seq
DB search
MSAARASLVSYGSDSDSENESEVNTGVEKVDQVDPDATAHLKSLKSGNKMSLAVLNSAPE
VAVKEAVETGTHLDPSLKEVTYNPTYETMFAPEFGPVNPFKTQQMAAPRNMLSGYAEPAH
VNDFMFEQQRRTFSTYGYALDPSVDTHHVSSNSFIGAVDEAEKNKGLTVFESGYKKSEKR
KKVKGGDAGEIDNFLGPWAKYVDEKDMAKPSEEEQKELDEIMAKRQKKGRNEEEAPAEEK
TILHVKDMYDYQGRSYLHVPQDVGINLRSADVPDKCYLPKKQIHVWSGHTKGVSAIRLFP
SSGHLLLSCSMDCKIKLWEVYGERRCIRTFIGHSKAVRDICFNNSGTQFLSAAYDRYLKL
WDSETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRTSEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKVFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgccagagcttccctcgtttcgtacggcagcgattctgattcggagaatgag
tcggaagttaataccggtgtcgagaaagtggaccaggtggacccagatgccacggctcac
ctaaaatctttgaagtctggaaacaagatgtctttggctgttctcaattctgctcccgag
gtcgccgttaaagaggctgtcgagactggcacacatctggacccttcgttgaaagaagtc
acttataacccgacatatgaaaccatgtttgcaccagagtttggcccagtgaacccattt
aaaacccagcagatggctgcccccaggaacatgttgtctggctatgcagaacctgctcat
gtcaacgactttatgtttgaacagcaaaggaggaccttctcaacctatggttatgcttta
gatccctctgttgacacacaccatgtatcctctaatagcttcattggtgcagtagatgaa
gctgagaaaaataaaggattaactgtatttgagagtggatataagaagtcagagaaaagg
aaaaaggtcaaaggtggagatgcaggagagattgacaacttccttggaccatgggcaaaa
tatgtagatgagaaagatatggccaaaccatcagaggaagagcagaaagagttggatgaa
atcatggccaagagacagaagaagggaaggaatgaggaggaggctccagcggaggagaag
accattctccacgttaaagacatgtatgattaccagggcaggtcctacctccacgtccca
caggatgttggcatcaacttgcgttctgcggatgttccggacaagtgttacctgcctaag
aaacagattcatgtctggtctggacacaccaagggtgtcagtgctattcgactatttcct
agctccggccatctactgctctcctgctccatggactgtaaaatcaagctatgggaagtg
tacggcgagaggaggtgtatacggacgtttattggccacagcaaagcagtacgagacatt
tgcttcaacaacagcggaacccagttcctcagcgctgcctatgaccgctaccttaaactc
tgggactctgagacaggccaatgtatttcccgcttcaccaacagaaaggtaccgtactgc
gtcaagttcaacccagatgaggacaaacagaaccttttcgtggccggcatgtcagataag
aagattgttcagtgggatatcaggacaagtgaggtggttcaagagtatgaccgtcacctg
ggagccgtcaacaccatcacctttgttgatgagaatcgtcggtttgtcagcacgtcggac
gacaagagtcttcgagtttgggagtgggacatccctgtggacttcaagtatatcgctgag
cccagtatgcactccatgccagctgtgacactctctcccaatggtaaatggctagcatgc
cagtccatggacaaccaaattcttatatttggagcccaaaaccgcttcagactgaacaag
aagaaggtcttcaagggccacatggtggctggctatgcctgccaagtggacttctcccca
gacatgagctatgtggtgtcaggagatgcagatggaaagctgaacatttgggattggaag
accaccaagctttaccacaggatcaaggctcatgacaaggtttgcatcagtgccctgtgg
catccgcacgaaacctccaaggttatcacctgcggctgggatggacaaatcaaactctgg
gactag
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