Xiphias gladius (swordfish): 120789597
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Entry
120789597 CDS
T07311
Symbol
sox17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
120789597 (sox17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xgl03000
]
120789597 (sox17)
Transcription factors [BR:
xgl03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120789597 (sox17)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
120789597
NCBI-ProteinID:
XP_039982313
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Position
LG5:16357649..16360153
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AA seq
400 aa
AA seq
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MSSPDAGYASDDQTQARFTMSVMMPGMGHCQWADPLSPLGDTKVKNEPCASSSGSQNRGK
SEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVTEKQPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLDSGFLVHGVSDHQAPSMTGDGRVCVESLGLGY
HEHGFQLPPQSLSHYRDAQALGGPSYETYSLPTPDTSPLDAVESDSMFFPPHSQEDCHMI
PAYAYHSQAAEYQPQDPHSSHHSNPILHRHAASAPEQPPQPATLPPSYMGCPNPLAMYYT
QHCSPSHPKRHPGGAGQLSPPPDSHPHSADSVEQMHHSELLAEVDRSEFEQYLSSSSARA
DMTGLPYGPHEAGMQGPESLISSVLSDASTAVYYCSYNNS
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcccgatgcgggttatgccagcgacgatcagacccaggcaaggtttacgatg
tcagtcatgatgcctggaatgggacactgccagtgggccgaccctctcagtcctcttggg
gacaccaaagtgaaaaacgagccgtgcgcgtccagctccggcagccagaatcgcgggaag
agcgagccgcggatccggcggcccatgaacgccttcatggtctgggcgaaggatgaacgc
aagagactggcgcagcaaaaccccgacctgcataacgccgagctgagcaaaatgttgggg
aaatcatggaaagcccttcctgtcacagaaaagcagccctttgtggaggaggccgagcgg
ctgcgggttcagcacatgcaggatcaccccaactacaagtacaggccccggcggcggaag
caggtgaagaggattaagaggctggattctggctttctggtccacggcgtgtccgatcac
caggccccgtcgatgacgggagatggcagagtgtgtgtggagagcctgggcctgggctac
cacgagcatggcttccagcttcctccacagtcgctcagtcactaccgggatgctcaggct
cttgggggcccctcttatgaaacctacagcctccccacacctgacacctctcctctggac
gctgtggagtcagactccatgttcttccctccacattcacaggaggactgccacatgata
ccagcatacgcttaccactcccaggcggcagagtaccagccccaggacccccactccagc
caccacagcaaccccatcctgcaccgacacgctgcctcggctccagagcagccccctcag
cctgccacccttcccccttcttacatgggatgccccaaccctctggccatgtattacacc
cagcactgcagtcccagccaccctaagcggcaccctggaggagcaggacagctctcccct
cctcctgactctcacccccactctgcagacagcgtggagcagatgcaccactctgagctg
ctggctgaggtggaccgcagcgagttcgagcagtatttgagttcctcttcagcgcgtgcg
gacatgacaggcttgccctacgggccacacgaggccggcatgcaaggacctgaaagcctc
atatcgtcggtgctgtcagacgccagcacagctgtgtattactgtagctacaacaactcc
taa
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