Xiphias gladius (swordfish): 120790022
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Entry
120790022 CDS
T07311
Symbol
trpa1b
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xgl04040
]
120790022 (trpa1b)
Ion channels [BR:
xgl04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
120790022 (trpa1b)
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GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Ank_KRIT1
DUF5798
Motif
Other DBs
NCBI-GeneID:
120790022
NCBI-ProteinID:
XP_039983195
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Position
LG5:12359795..12377675
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AA seq
1133 aa
AA seq
DB search
MNFSREVARQNSCYTYVIEDEDPALASLNVFKLAERGDLALLENLVRKSPDVLNEKDECG
ASLLHHAAAGGHVTIIQCITTVIDQQGKNASAIDLKMHSSTDLNSCDEQGNVPLHWAVER
NKADSCRALMDLGVNPNILNMALLSPLHLAVNRGYNDLVELLLSYSATDCNLEGDLGNNP
MILASSINNCEALSTLLKHGAKLCQQNKLGHFPIHAAAFAGAKKAMEVILKAGEEFGHSA
VSHINYLDKSKSSPLHLAVRGGNIEAIRLCVATGAKVDQQQNDRSTPLHLACTQGATDIV
KLMLSSFDQVEEIINLTDGACQTPLHRATIFDHTELAKYLISLGANLNSIDCKGNSPLLL
ATSCGAWRTVSLLLSKGANVNVKDRCGCNFLHLAILQPKGLKNLSEEVLQHNSVKALLSC
EDNDGCTPLHYACRLGIHDTVKNMLGLSGGVGLACKSKDKKSALHFAAQYGRINTCHRLL
ETITDSRLLNEGDEKGLTPLHLASRWGHTKVVQLLLRKGALFHSDYKGWSCLHHASSEGY
TQTMDILLSANPKLLDKIDEDGNTALHIAAREGHVAAVKVMLARGAELILNKNDTSFLHE
ALQNGRKDVVNAIIDSDRCAEALTLFTPGSSQRCPILDMIEFLPETYKHLLDRSIRESDD
DHNSNDYHIEYNFRWLQAPLATKKVTDKTLRYQPLAALNAMVQYNRIELLNHPVCKKYLA
MKWIAYGSTAHVLNMFLYLLGLLPLTHLIVTLRPTMNTTGTGEHSIIMVPISFIEQSLFL
SFCMVMVLVINVYCIAKELMQISQQRWNYFKDYSNQCDWFSAIFSLLFIIPVMLNVEGSL
HWQAGAMAVLSSWVGFLLYLQRFEGVGIYVVMFGEILKTLVRIVMLFIYLMLAFGLAFHA
LMLHQKEFDSVSLSVMQTFVMMVGELNYQNNFLDAYLNNKLPFGLLTYVTFVNFVLLMPI
LLVNLMIGLAVGDIAEVQRNAVLKRIAMQIDLHTALEDKLPYWIMKRVDKHSITIYPNRK
CSKHHVRQLITGGEEANEVWSRLQAKSQNCTVIENELRKQKCRMKEMSSMLEKQHSLLKL
VIQKMDITSEADEYDGPVNVKGSMWLSPSQVKPRGHSVSWWVPVMKAIDSKRK
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcagcagggaggtggcccgacagaacagctgttatacatatgtgatagaagat
gaggatccagccctggcaagcctaaatgtattcaagttggctgagaggggtgacctagct
ctcctggagaacctggtgaggaagagcccagatgtcctgaatgagaaagatgaatgtgga
gctagtctccttcatcatgctgccgcagggggccatgtcaccatcatccaatgcatcacc
acggtcatagaccaacaaggtaagaatgcctcagccatcgatcttaagatgcactccagc
acagaccttaacagctgtgatgaacagggcaatgtgcccctacactgggcagtggagagg
aacaaggcagacagctgcagggctcttatggacctgggggtcaaccccaatatcctcaac
atggccctcctgtcccctctgcacctggcagtcaaccgtgggtacaacgacctggtggag
ctgctgctgtcttacagtgctactgactgtaatctggagggagaccttgggaacaaccca
atgatactggccagctctatcaataactgtgaagctctcagcacactgttgaagcatgga
gcaaagctctgccaacagaacaagctcggccattttcccatccatgcagctgcctttgcg
ggtgcaaagaaagctatggaagtgatcctgaaggccggagaggagtttggccactcagct
gtatctcacatcaactatttagacaaatccaagagcagtcccctccatctggctgttcgt
ggtgggaatattgaagctattcgcctctgtgttgctactggggccaaagttgaccagcaa
cagaatgacaggtccacaccactacatttggcctgcacccagggtgctactgatatagtc
aaactgatgctctcctcctttgaccaagtggaagagatcatcaacctaactgatggggcg
tgtcagacccctctacacagggctacaatatttgaccacacagagctggcaaagtacctg
atttctttgggtgcaaacctaaacagcattgattgtaaaggaaactctcccttgctgctg
gccacgagctgtggagcatggagaactgtgtctctgctactgtcaaaaggggcaaatgta
aatgtgaaagacagatgcggttgtaacttccttcacctggccattctgcagcccaagggt
ctcaagaatctctcagaagaagtactgcagcataacagtgtgaaggcattgctgagctgt
gaggataatgacggctgcaccccactccactacgcttgcagactgggtatccatgacaca
gtgaagaacatgctgggcctctcggggggggtcggccttgcatgcaagtccaaggacaag
aagtctgccttgcactttgctgctcagtatgggcgcatcaatacatgtcaccgattactc
gagaccatcacagactctcgtttgctaaatgaaggtgatgagaaaggcctgacaccactt
catttggcttcaagatgggggcacaccaaggtggtacagttgttgctacgcaaaggagct
ctctttcacagtgattataagggctggagttgtctgcaccatgcttcatctgaaggatac
acacaaactatggacattctcctgtcagccaatcccaagttattggataaaatagatgag
gatgggaacactgcactccacatcgcagcaagagagggacatgtggctgcagtcaaggtc
atgctggctcggggagcagagctcatcttaaacaagaatgacacctcattcctccatgaa
gctctgcaaaatgggagaaaagatgtggtcaatgctataattgacagtgacagatgtgct
gaggctttgacactgttcacacctggctcaagccagcgatgtcccatactagacatgatt
gagtttctgcctgagacctacaagcacctattggaccggagtattagggaatctgatgat
gaccacaacagtaatgactaccatattgaatacaatttcagatggctccaagctcccctt
gcaacaaagaaggtaactgacaagacattgaggtaccagccactagctgcactcaatgca
atggtgcagtacaaccgcattgagctcctcaaccaccctgtctgcaaaaagtatctggca
atgaagtggattgcatatgggagcacggctcatgtgctcaacatgtttttgtacctgtta
ggcctgctgcccctgactcacctgatagtgactctgaggccaactatgaacaccactggc
acaggcgagcacagtatcattatggtgcccatatcttttatagagcaaagtctgttcttg
tccttctgtatggtgatggtcttggtcattaacgtgtattgcattgcgaaggaattgatg
cagatatcacaacagcgctggaattacttcaaagattattccaaccagtgtgactggttt
tcagccatcttctctcttctgttcatcatccctgtcatgctcaatgtagagggttcttta
cattggcaagcaggggcaatggcagttttaagctcctgggttggatttctcctttatctc
cagaggtttgagggtgttggcatctatgttgtgatgtttggagagatccttaagacactg
gttcgtattgtgatgctattcatatacctgatgttagcattcggattggcattccatgct
ttgatgctccaccagaaagagtttgacagcgtgtcactctcagtgatgcagacctttgtg
atgatggttggggaactgaactaccagaataacttcctggatgcttatctgaacaataag
cttccttttggtctcctgacttacgtcacttttgttaactttgtgctgctaatgccaata
ctgctagtgaacctcatgattggtttagcagttggagacattgctgaagtacaaagaaat
gctgtcctaaaaagaatagccatgcagattgacctccacaccgctctggaagataagctc
ccttattggattatgaaacgagtcgacaaacactccataaccatctaccccaatcgcaag
tgctccaagcaccacgtaaggcaattaatcacaggtggtgaggaagcaaatgaagtctgg
agtcgtctgcaggccaaatcacagaactgcactgtgatagagaatgagctcagaaagcag
aagtgcaggatgaaagaaatgtcaagcatgctggagaagcagcacagcctcctgaagctc
gtcatccagaagatggatatcacctcagaggctgatgagtacgatggccctgtgaatgtc
aaaggcagcatgtggctgagcccgagtcaggttaaaccaagaggacatagtgtgtcctgg
tgggtcccagtaatgaaggccatcgattccaaaagaaagtaa
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