Xiphias gladius (swordfish): 120790031
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Entry
120790031 CDS
T07311
Symbol
col11a1a
Name
(RefSeq) collagen, type XI, alpha 1a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120790031 (col11a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xgl00536
]
120790031 (col11a1a)
Glycosaminoglycan binding proteins [BR:
xgl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120790031 (col11a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
120790031
NCBI-ProteinID:
XP_039983210
LinkDB
All DBs
Position
LG5:1094372..1175366
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AA seq
1811 aa
AA seq
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MEMQRWSTRWKTKRWLMDSAVTAFITLTLVLQAANVRAAEPVDVLKVLEFQNYPEGVTKA
SGFCTNRRASKADSAYRVARQAQISAPTAQLFPGGVFPEDFSILTTVRPKSGLQSFLLSI
YNKQGVQQLGVEVGRSPVFLYEDQAGKPAPEDYPLFRTLNLADGKWHRVAISVDKKTVTI
IADCKKKIIKPLPRSDHASIDTNGITVFGTRILDEEVFQGDIQQLLIVADPRAAYDYCEH
YSPDCDTPHSDSLQAQEPEEEYTIDDLDYSQFYDYSEGATDIVPTDEYSEPQLNNVEGDY
NTDIDYGTVDGTHTQSPFATSGPYEAVEEDVAGAYVTEDAPTAPEPTPVPETVDSPDTGA
EAYDFKEYDLKEYDLGQVDNRLYDYGAYDEYGKAPPRPTASYDDEVGPGVAAETDVSEST
VAGAGGAFGQKGEKGEPAVIEPGMLIEGPPGPPGPAGLPGPSGLQGPPGPSGDPGDRGPP
GRAGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPM
GLTGRSGPVGLPGSPGLKGESGDPGPQGPRGIQGPPGQTGKAGKRGRAGADGARGMPGES
GAKGDRGFDGLPGLPGEKGHRGEPGPMGPPGAPGEDGQRGEDGEIGPRGLAGESGPRGLL
GPRGPPGPPGSPGVAGVDGPPGPKGNMGPQGEPGPPGQQGTPGTQGLPGPQGPIGPPGEK
GPQGRSGLPGLPGADGPPGHPGKEGPAGEKGAQGPHGPQGPIGYPGPRGVKGADGVRGLK
GSKGEKGEDGFPGFKGDMGIKGDRGESGMLGPRGEDGPEGPKGRSGPNGESGPIGPAGEK
GKLGVPGLPGYPGRQGPKGSSGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGARGAR
GPTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGET
GFQGKTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ
GSPGKDGPPGLRGFPGERGLPGATGPAGLKGGEGPQGPPGPVGSPGERGPAGPAGPIGLS
GRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGEP
GQKGSKADKGEQGPPGPAGLQGPIGAPGPAGADGEPGPRGQQGMFGQKGDEGPRGFPGPP
GPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPMGSVGEK
GEQGEAGNPGPPGEHGTGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFP
GDPGPPGEPGVAGTDGESGEKGEDGEAGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQ
GEKGAKGEAGAEGPAGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGSPGQDGPPGPM
GPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGGKGDSGISGAA
GPLGPPGPPGLPGPQGPKGAKGSSGPAGPKGDTGSVGPPGPPGPPGEVIQPLPIQSPKKT
KRSIDMQSDAASAILDYGEGMEDIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHP
EFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIHPDKKSNGVRISSWPKEVPGSWFSEF
KRGKLLSYVDADGNSINMVQMTFLRLLTASARQNFTYSCHQSVAWHDASSNGYDKALRFL
GANDEEMSYDNNPYIKALSDGCATRKGYGKTVMEINTPKIDQVPIIDVMLTDFGDPNQKF
GFEVGPVCFLG
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaaaggtggcttatggattccgct
gtaaccgcattcatcactttaaccctggttctacaggctgctaatgtcagagcagcagaa
ccagtggatgtcctaaaagtattagaatttcaaaattaccccgaaggagtgacaaaagca
tcgggattttgcacaaaccgaagagcatcaaaggcggactcggcttacagagttgccagg
caggcccagatcagtgcccccaccgcgcagttattccccggaggcgtttttcctgaggac
ttctccatcctgaccacggtgcgccccaagtccggcctccagtctttcttgctgtccatt
tacaacaagcagggagtccagcagctgggtgtggaggttggacgctcccctgtcttcctg
tatgaggatcaggccggtaaaccagccccagaggactaccccctgttccgtactctcaac
ctcgctgacggaaagtggcaccgtgtggccatcagtgtggataagaagacggtcactatc
atcgccgactgtaagaagaagatcattaagcctctccccaggagtgaccacgcttccatc
gacaccaatggcattaccgtgtttggcaccaggatcctggatgaggaggttttccagggc
gacatccagcaacttctgatcgtggctgatcccagagcagcatatgactactgtgaacat
tacagcccagactgtgacactccccacagcgattccctgcaggcccaggagccagaggaa
gagtacactattgatgatttagattactctcagttctatgattactctgagggagccaca
gacatcgttccaaccgatgagtattctgaaccacagctaaacaatgtagaaggagattac
aatacagacattgactacggaactgtagatggtactcacactcagtccccctttgccaca
agtggaccctatgaggctgtggaggaggatgtggccggtgcttatgtcaccgaggacgct
cccactgctccggagcccacccctgtcccagaaacggtggacagccccgacactggtgcg
gaagcatatgactttaaggaatatgacctaaaggagtatgacttgggccaggttgacaac
aggttgtatgattacggggcgtacgatgagtatggcaaggccccgcccagacccacggcg
agctacgatgatgaggtggggcccggggtcgctgctgaaaccgatgtttccgagagcacc
gttgctggtgccggaggagcctttggccagaagggagaaaagggcgagccggccgtgatt
gaacctggcatgctgattgaaggaccaccagggcctcctggcccagctggtcttccaggt
ccctcaggcctacaaggacccccaggcccttccggagatcctggtgacagaggtcctcct
ggtcgggctggtctgcctggtgctgatggtttgccagggccccctggtaccatgctgatg
ctgccattccgttttggtggggatggtgagaagggtccagtggtgtcggcccaggaagcc
caagcccaggccatcctctcccaggccagactggccatgaggggaccccccgggccgatg
ggtctgactgggagatcagggccagtgggtctacctggttctcctggactgaaaggtgaa
agcggagaccctggtcctcagggtccccgtggcatccaggggcctccgggacaaactggc
aaggctggcaagaggggccgcgctggagccgacggcgcccgggggatgcccggagagtca
ggtgccaagggtgacagaggctttgatggactccccggactgcctggtgaaaagggacac
aggggggagccagggccaatgggaccccccggtgcccccggagaggatggacagagaggc
gaggatggagagatcgggcccagaggattagccggcgagagtggtcccagaggtttgttg
ggacctcgtggtcccccgggaccccctggatctcctggtgttgctggagtcgacgggcct
ccgggtcccaaaggaaacatgggaccacaaggagaaccaggcccacctggtcagcaagga
accccaggaacgcagggtcttcctggtcctcaaggccccattggaccacctggagaaaag
ggacctcagggcaggtcggggttgcctggattacctggagctgacgggcctcctggtcat
cctggtaaggaggggccagccggagagaaaggagcacaaggtccacatggtccacagggt
cccattggttatcccggccctcgcggtgtgaagggtgctgatggtgtccgtggtctcaag
gggtcaaagggagagaagggcgaggacggtttcccaggtttcaagggagacatgggaatc
aaaggagaccggggcgagtctggcatgcttgggccccgtggagaggatggtcccgagggt
cctaaaggccgatctggacccaacggagaatcgggtcccattggtcccgctggggaaaag
ggtaaacttggtgtcccaggattgccaggttatccgggaagacagggaccaaagggctcg
agcggtttccctgggttccccggagccaacggcgagaaaggagccaggggtgttgcaggt
aaacctggtccaagagggcaaagaggtccaacgggtcctcgtggtgctcgcggagccaga
ggtccaacgggaaaaccaggccccaagggcacagcaggcaacgacggtcctccgggaccg
cctggtgagagggggcctcaaggacctcagggacccgtcggcttccccggaccaaagggc
ccccctggaccccctggaaaggatgggctgcccggacaccctggccagcgcggagaaacg
ggtttccaaggaaaaactggtccaccaggcccaggaggtgttgtcgggccccagggaccc
actggagagaccggtcctgttggcgagagaggccaccccggaccccccggtccacccgga
gaacaggggcttccaggtgctgctggcaaggagggagcgaagggagaccccggaccacag
ggatccccgggtaaggacggtccccccggccttcgaggcttccctggtgagagaggcctg
cctggtgccacgggcccagcaggtctgaaaggaggagaggggccccaaggtccgcctggt
cctgttggttctcctggtgagagaggtcctgctggtccagctggtccaatcggcctgtcc
ggtagacccggccctcagggtcccccaggtcctgccggagagaagggagcacctggtgag
aaagggcctcaaggtccagccggtcgcgacggtgtccagggtcctgttggtctgcctggg
cctgctggaccccagggtccacccggagaggatggcgacaagggagaagttggagagcct
ggtcagaaaggaagtaaagccgacaagggagaacagggtcctcctggcccagctggtctc
caaggtcccataggtgccccaggtcccgctggagctgatggagagcctggtcccagaggc
cagcagggtatgtttggacaaaaaggagatgaaggtcccagaggtttccctggacccccc
ggtcccatcggcctgcaggggcttcctggacctcccggtgagaagggagagaacggtgat
gtcggccccatgggccctcctggtccccctggtcccagaggtcctcagggtcctagtgga
gctgatggtccacaaggtcctccaggcggtgtgggccccatgggatctgtgggtgagaag
ggtgagcaaggtgaggccggaaacccaggaccacctggagagcatggaaccgggggaccc
aaaggtgagagaggagagaaaggagaggctggcccccctggagctgctggacctgctggt
gccaaaggaccccctggagatgatggtccaaagggcaaccctggtccggttggattccct
ggagaccctggccctcccggagagccaggtgttgctggaactgatggggaatcaggagag
aagggagaggacggtgaggccggtcagccgggacctccgggtccatcaggagaagctggc
ccacctggaccacctggcaagagaggacctccgggggccgcaggtgcagagggcaggcaa
ggagagaagggcgcaaagggtgaggccggcgcagagggtccagcaggtaaaacgggaccg
gtcggtccccagggaccctcgggaaagcccggtccagaaggtctacgtggaatccctggc
cccgttggtgaacaaggactgccaggctccccaggacaggatggtccacctggtcccatg
ggtcctcctggtcttcctggtctgaaaggtgaccctggatctaagggtgaaaagggtcac
ccaggtttaatcggtctgatcggaccccctggtgagcaaggagagaaaggagaccgaggt
ttgcccgggccccagggttctcctggtggcaagggcgacagtggtatcagtggcgctgcc
ggtcctctcggccccccgggtccccctggtctgcctggtcctcaaggtcccaagggagcc
aaaggttcaagtggtcccgccggtcctaaaggagacaccggctcagttggtcctcctggt
cctcctggcccaccaggtgaggtgattcagcccctgcccatccagtcacctaagaaaacc
aaacgctccattgacatgcagtcagatgcagccagtgccatcttggactatggcgagggc
atggaggacatcttcggctcgctcaacaacctcaaacaggacattgaacgcatgaagtac
cccatgggcacgcaaaacaaccccgcaagaacatgcaaagatctgcaactttgccaccca
gagttccctgatggcgaatactggattgatccaaaccaaggctgctcgggggattccttc
aaagtctactgtaacttcactgctgggggcgaaacctgcatccatccagataagaagtcc
aatggagtcagaatatcttcatggcccaaagaagttcctgggtcatggttcagtgaattt
aagcgtggtaaactactttcctacgtcgacgcagacggaaactcaataaacatggtacag
atgaccttcctcagactactgacggcctcggccaggcaaaacttcacctacagctgccac
cagtctgtggcgtggcacgacgccagcagcaacggctacgacaaggcgctgcgcttcctg
ggcgccaacgacgaggagatgtcctatgacaataacccttacatcaaggccctctcagac
ggatgcgcgacgaggaagggctatggaaagactgtgatggagattaatactcccaaaatc
gatcaggttccaatcatcgatgtcatgttgactgactttggggaccctaaccagaagttc
gggtttgaagttgggcccgtctgcttccttggctaa
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